RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 FAM49AQ9H0Q0 323 aaPredicted RBP13.56□□□□□ -0.24
LIG3-209ENST00000586435 GLT8D2Q9H1C3 349 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 ANO2Q9NQ90 1003 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 CLDND1Q9NY35 253 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 TRPC6Q9Y210 931 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 PLXNA4Q9HCM2 1894 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 IGKV6D-21A0A0A0MT36 114 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 SMIM35A0A1B0GVV1 85 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 POTEB3A0JP26 581 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 C19orf67A6NJJ6 358 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 SREBF1P36956 1147 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 CLK2P49760 499 aaKnown RBP13.55□□□□□ -0.24
LIG3-209ENST00000586435 STAT5BP51692 787 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 ADCY7P51828 1080 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 RCAN1P53805 252 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 NAPAP54920 295 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 ITGB3BPQ13352 177 aaPredicted RBP13.55□□□□□ -0.24
LIG3-209ENST00000586435 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 NIPA1Q7RTP0 329 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 ADHFE1Q8IWW8 467 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 NME8Q8N427 588 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 CYP2W1Q8TAV3 490 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 ANO3Q9BYT9 981 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 AGO4Q9HCK5 861 aaKnown RBP13.55□□□□□ -0.24
LIG3-209ENST00000586435 PIEZO1Q92508 2521 aa13.55□□□□□ -0.24
LIG3-209ENST00000586435 ZNF318Q5VUA4 2279 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 STXBP3O00186 592 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 MEIS1O00470 390 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 DCXO43602 365 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 STAG3L1P0CL83 205 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 ARP10275 920 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 IRX6P78412 446 aaPredicted RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 EXOSC10Q01780 885 aaKnown RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 HYAL1Q12794 435 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 PAK2Q13177 524 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 CAMK1Q14012 370 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 SMAD2Q15796 467 aaKnown RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 RTN1Q16799 776 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 TSGA10IPQ3SY00 556 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 BMP2KLQ5H9B9 411 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 EP400NLQ6ZTU2 488 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 RTN4RL1Q86UN2 441 aaPredicted RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 ZBTB10Q96DT7 871 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 NEK1Q96PY6 1258 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 CELF4Q9BZC1 486 aaKnown RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 BARHL2Q9NY43 387 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 PADI3Q9ULW8 664 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 PLAGL2Q9UPG8 496 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 MRPL42Q9Y6G3 142 aaKnown RBP13.54□□□□□ -0.24
LIG3-209ENST00000586435 COL1A2P08123 1366 aa13.54□□□□□ -0.24
LIG3-209ENST00000586435 ZBTB43O43298 467 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 HBP1O60381 514 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 TBX10O75333 385 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 SCG2P13521 617 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 SMAD4Q13485 552 aaKnown RBP13.53□□□□□ -0.24
LIG3-209ENST00000586435 MTHFD1LQ6UB35 978 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 DHX32Q7L7V1 743 aaKnown RBP13.53□□□□□ -0.24
LIG3-209ENST00000586435 TRAPPC12Q8WVT3 735 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 PPP2R3CQ969Q6 453 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 PGBD1Q96JS3 809 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 POP1Q99575 1024 aaKnown RBP13.53□□□□□ -0.24
LIG3-209ENST00000586435 BRPF3Q9ULD4 1205 aa13.53□□□□□ -0.24
LIG3-209ENST00000586435 SMCO2A6NFE2 343 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 MBTPS2O43462 519 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 CCNE2O96020 404 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 ITGB1P05556 798 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 KRT76Q01546 638 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 DLX2Q07687 328 aaPredicted RBP13.52□□□□□ -0.25
LIG3-209ENST00000586435 TMEM62Q0P6H9 643 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 FAM160B1Q5W0V3 765 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 ABHD15Q6UXT9 468 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 SPPL3Q8TCT6 385 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 ATP8B4Q8TF62 1192 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 CRYGNQ8WXF5 182 aa13.52□□□□□ -0.25
LIG3-209ENST00000586435 UPF3BQ9BZI7 483 aaKnown RBP13.52□□□□□ -0.25
LIG3-209ENST00000586435 ALG13Q9NP73 1137 aaKnown RBP13.52□□□□□ -0.25
LIG3-209ENST00000586435 V9GY48 417 aaPredicted RBP13.52□□□□□ -0.25
LIG3-209ENST00000586435 IGLV3-22A0A075B6J6 115 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 ESYT2A0FGR8 921 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 GOLGA8AA7E2F4 631 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 GOLGA8BA8MQT2 603 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 CYP3A4P08684 503 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 SARSP49591 514 aaKnown RBP13.51□□□□□ -0.25
LIG3-209ENST00000586435 ADAM15Q13444 863 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 KRT32Q14532 448 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 ODR4Q5SWX8 454 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 MCTP2Q6DN12 878 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 CCDC60Q8IWA6 550 aaPredicted RBP13.51□□□□□ -0.25
LIG3-209ENST00000586435 TMX1Q9H3N1 280 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 ERVK-5Q9HDB9 667 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 C1orf112Q9NSG2 853 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 FAM217BQ9NTX9 383 aaPredicted RBP13.51□□□□□ -0.25
LIG3-209ENST00000586435 RNF216Q9NWF9 866 aaPredicted RBP13.51□□□□□ -0.25
LIG3-209ENST00000586435 CD207Q9UJ71 328 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 TECTAO75443 2155 aa13.51□□□□□ -0.25
LIG3-209ENST00000586435 NID2Q14112 1375 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 FAM86B1E9PN63 330 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 BACH1O14867 736 aa13.5□□□□□ -0.25
LIG3-209ENST00000586435 DHX15O43143 795 aaKnown RBP13.5□□□□□ -0.25
LIG3-209ENST00000586435 EYA4O95677 639 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms