RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 ETNPPLQ8TBG4 499 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 ATP8B4Q8TF62 1192 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 DNAJB3Q8WWF6 145 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 C22orf23Q9BZE7 217 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 PRDM12Q9H4Q4 367 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 ZNF302Q9NR11 478 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 ORC3Q9UBD5 711 aaPredicted RBP17.19■□□□□ 0.34
CLIP3-202ENST00000585466 TRPC6Q9Y210 931 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 COL4A4P53420 1690 aaPredicted RBP17.18■□□□□ 0.34
CLIP3-202ENST00000585466 COL4A6Q14031 1691 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.18■□□□□ 0.34
CLIP3-202ENST00000585466 LCHNA4D1U4 455 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 FAM205CA6NFA0 338 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 EPOPA6NHQ4 379 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 SLC37A4O43826 429 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 PSMD10O75832 226 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 IKBKEQ14164 716 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 LPIN1Q14693 890 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 INF2Q27J81 1249 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 MIS18BP1Q6P0N0 1132 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 SMAP1Q8IYB5 467 aaPredicted RBP17.18■□□□□ 0.34
CLIP3-202ENST00000585466 SLC17A8Q8NDX2 589 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 RIT2Q99578 217 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 PCDHA2Q9Y5H9 948 aa17.18■□□□□ 0.34
CLIP3-202ENST00000585466 BACH1O14867 736 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 ZNF862O60290 1169 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 HBP1O60381 514 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 EFCAB14O75071 495 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 GJB5O95377 273 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 FOSL2P15408 326 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 KCNJ6P48051 423 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 TAP1Q03518 808 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 NONOQ15233 471 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLIP3-202ENST00000585466 UGCGQ16739 394 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 FBXO47Q5MNV8 452 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 FAM160B1Q5W0V3 765 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 PPP2R2DQ66LE6 453 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 PDXDC2PQ6P474 469 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 MTHFD1LQ6UB35 978 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 KRT25Q7Z3Z0 450 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 MAFAQ8NHW3 353 aaPredicted RBP17.17■□□□□ 0.34
CLIP3-202ENST00000585466 UNC45AQ9H3U1 944 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 SLC28A3Q9HAS3 691 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 PCDHA10Q9Y5I2 948 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 CDY2AQ9Y6F7 541 aa17.17■□□□□ 0.34
CLIP3-202ENST00000585466 COL1A2P08123 1366 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 TTC3P53804 2025 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 PRRC2BQ5JSZ5 2229 aaKnown RBP17.16■□□□□ 0.34
CLIP3-202ENST00000585466 GHRP10912 638 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 RBM25P49756 843 aaKnown RBP17.16■□□□□ 0.34
CLIP3-202ENST00000585466 MRPS6P82932 125 aaKnown RBP17.16■□□□□ 0.34
CLIP3-202ENST00000585466 USP38Q8NB14 1042 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 SEPT8Q92599 483 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 FAM49AQ9H0Q0 323 aaPredicted RBP17.16■□□□□ 0.34
CLIP3-202ENST00000585466 AGO3Q9H9G7 860 aaKnown RBP17.16■□□□□ 0.34
CLIP3-202ENST00000585466 KCNMB3Q9NPA1 279 aa17.16■□□□□ 0.34
CLIP3-202ENST00000585466 REV3LO60673 3130 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 SMIM35A0A1B0GVV1 85 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 WDR64B1ANS9 1081 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 STBD1O95210 358 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 C22orf31O95567 290 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 PSAPP07602 524 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 HTRA4P83105 476 aaPredicted RBP17.15■□□□□ 0.34
CLIP3-202ENST00000585466 NR5A1Q13285 461 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 LRCH2Q5VUJ6 765 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 LINC01465Q8N7H1 131 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 BBXQ8WY36 941 aaPredicted RBP17.15■□□□□ 0.34
CLIP3-202ENST00000585466 IFIH1Q9BYX4 1025 aaKnown RBP17.15■□□□□ 0.34
CLIP3-202ENST00000585466 DISC1Q9NRI5 854 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 GABBR1Q9UBS5 961 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 KDM3AQ9Y4C1 1321 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 A0A0C4DFX4 3053 aa17.15■□□□□ 0.34
CLIP3-202ENST00000585466 TLL1O43897 1013 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 GAS7O60861 476 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 KLRC1P26715 233 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 ZNF484Q5JVG2 852 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 PPP4R3AQ6IN85 833 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 PIK3AP1Q6ZUJ8 805 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 KIAA0319LQ8IZA0 1049 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 LINC01599Q8WXQ3 324 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 WASF1Q92558 559 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 HAS1Q92839 578 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 CEP89Q96ST8 783 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 TEKT3Q9BXF9 490 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 DDX25Q9UHL0 483 aaKnown RBP17.14■□□□□ 0.33
CLIP3-202ENST00000585466 VAV3Q9UKW4 847 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 LIMCH1Q9UPQ0 1083 aa17.14■□□□□ 0.33
CLIP3-202ENST00000585466 WNT7AO00755 349 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 RPLP2P05387 115 aaKnown RBP17.13■□□□□ 0.33
CLIP3-202ENST00000585466 XBP1P17861 261 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 TMEM62Q0P6H9 643 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 LETM2Q2VYF4 491 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 TSHZ1Q6ZSZ6 1077 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 NEK8Q86SG6 692 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 RSPH3Q86UC2 560 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 RDM1Q8NG50 284 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 SP7Q8TDD2 431 aaPredicted RBP17.13■□□□□ 0.33
CLIP3-202ENST00000585466 APBB2Q92870 758 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 TNPO1Q92973 898 aaKnown RBP17.13■□□□□ 0.33
CLIP3-202ENST00000585466 TOP1MTQ969P6 601 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms