RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 FAM43BQ6ZT52 329 aaPredicted RBP16.55■□□□□ 0.24
SDF2-202ENST00000585428 RAB11FIP4Q86YS3 637 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 NPAS4Q8IUM7 802 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 LRRC2Q9BYS8 371 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 UPF3BQ9BZI7 483 aaKnown RBP16.55■□□□□ 0.24
SDF2-202ENST00000585428 FAM49AQ9H0Q0 323 aaPredicted RBP16.55■□□□□ 0.24
SDF2-202ENST00000585428 AZI2Q9H6S1 392 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 RIC8AQ9NPQ8 531 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 TRPV2Q9Y5S1 764 aa16.55■□□□□ 0.24
SDF2-202ENST00000585428 MRPL42Q9Y6G3 142 aaKnown RBP16.55■□□□□ 0.24
SDF2-202ENST00000585428 SMIM35A0A1B0GVV1 85 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 LINC01565O15544 149 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 FOSP01100 380 aaPredicted RBP16.54■□□□□ 0.24
SDF2-202ENST00000585428 ITGB1P05556 798 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 EXOSC10Q01780 885 aaKnown RBP16.54■□□□□ 0.24
SDF2-202ENST00000585428 CEP55Q53EZ4 464 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 WWC2Q6AWC2 1192 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 TYW1BQ6NUM6 668 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 MTHFD1LQ6UB35 978 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 HEATR3Q7Z4Q2 680 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 TRAPPC12Q8WVT3 735 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 MSLNLQ96KJ4 702 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 ESYT1Q9BSJ8 1104 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 TMX1Q9H3N1 280 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 IGFLR1Q9H665 355 aa16.54■□□□□ 0.24
SDF2-202ENST00000585428 AGO4Q9HCK5 861 aaKnown RBP16.54■□□□□ 0.24
SDF2-202ENST00000585428 DOCK5Q9H7D0 1870 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 TBX10O75333 385 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 EYA4O95677 639 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 STAG3L1P0CL83 205 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 KLRC1P26715 233 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 SLC26A2P50443 739 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 TMEM62Q0P6H9 643 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 ITGB3BPQ13352 177 aaPredicted RBP16.53■□□□□ 0.24
SDF2-202ENST00000585428 CSPP1Q1MSJ5 1256 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 KLHL23Q8NBE8 558 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 UIMC1Q96RL1 719 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 SDF4Q9BRK5 362 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 C5orf42Q9H799 3197 aa16.53■□□□□ 0.24
SDF2-202ENST00000585428 TTC3P53804 2025 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 M0QZ92 97 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 SCG2P13521 617 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 CLK2P49760 499 aaKnown RBP16.52■□□□□ 0.24
SDF2-202ENST00000585428 KRT76Q01546 638 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 SMAD4Q13485 552 aaKnown RBP16.52■□□□□ 0.24
SDF2-202ENST00000585428 CLUL1Q15846 466 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 HERC4Q5GLZ8 1057 aaPredicted RBP16.52■□□□□ 0.24
SDF2-202ENST00000585428 APOA5Q6Q788 366 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 ABHD15Q6UXT9 468 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 KIAA0319LQ8IZA0 1049 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 KCNH6Q9H252 994 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 CDHR5Q9HBB8 845 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 CLEC1BQ9P126 229 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 CD207Q9UJ71 328 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 TRPC6Q9Y210 931 aa16.52■□□□□ 0.24
SDF2-202ENST00000585428 V9GY48 417 aaPredicted RBP16.52■□□□□ 0.24
SDF2-202ENST00000585428 DHX15O43143 795 aaKnown RBP16.51■□□□□ 0.23
SDF2-202ENST00000585428 CCNE2O96020 404 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 PAK2Q13177 524 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 SYNE3Q6ZMZ3 975 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 ADGRD2Q7Z7M1 963 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 MICU3Q86XE3 530 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 EFHBQ8N7U6 833 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 POF1BQ8WVV4 589 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 PGBD1Q96JS3 809 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 POP1Q99575 1024 aaKnown RBP16.51■□□□□ 0.23
SDF2-202ENST00000585428 FAM217BQ9NTX9 383 aaPredicted RBP16.51■□□□□ 0.23
SDF2-202ENST00000585428 RBM28Q9NW13 759 aaKnown RBP16.51■□□□□ 0.23
SDF2-202ENST00000585428 BRPF3Q9ULD4 1205 aa16.51■□□□□ 0.23
SDF2-202ENST00000585428 SMCO2A6NFE2 343 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 STXBP3O00186 592 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 HBP1O60381 514 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 MGEA5O60502 916 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 ATP4AP20648 1035 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 SREBF1P36956 1147 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 SARSP49591 514 aaKnown RBP16.5■□□□□ 0.23
SDF2-202ENST00000585428 NAPAP54920 295 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 FAM189BP81408 668 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 COASYQ13057 564 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 TMEM266Q2M3C6 531 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 TSGA10IPQ3SY00 556 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 PPP1R18Q6NYC8 613 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 HFE2Q6ZVN8 426 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 NIPA1Q7RTP0 329 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 ALYREFQ86V81 257 aaKnown RBP16.5■□□□□ 0.23
SDF2-202ENST00000585428 RNF135Q8IUD6 432 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 CRYGNQ8WXF5 182 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 NEK1Q96PY6 1258 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 ANO3Q9BYT9 981 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 ERVK-5Q9HDB9 667 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 RGS18Q9NS28 235 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 TMEM260Q9NX78 707 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 BARHL2Q9NY43 387 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 RALGAPA2Q2PPJ7 1873 aa16.5■□□□□ 0.23
SDF2-202ENST00000585428 TRIOO75962 3097 aa16.49■□□□□ 0.23
SDF2-202ENST00000585428 CNTNAP5Q8WYK1 1306 aa16.49■□□□□ 0.23
SDF2-202ENST00000585428 ZBTB42B2RXF5 422 aa16.49■□□□□ 0.23
SDF2-202ENST00000585428 GATMP50440 423 aa16.49■□□□□ 0.23
SDF2-202ENST00000585428 NFX1Q12986 1120 aaKnown RBP16.49■□□□□ 0.23
SDF2-202ENST00000585428 PAN2Q504Q3 1202 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms