RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HYAL1Q12794 435 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 RTN1Q16799 776 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 POTEBQ6S5H4 581 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 ZNF713Q8N859 430 aaPredicted RBP24.05■■□□□ 1.44
VPS53-216ENST00000574029 TRAPPC12Q8WVT3 735 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 PRKAG3Q9UGI9 489 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 PADI3Q9ULW8 664 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 V9GY48 417 aaPredicted RBP24.05■■□□□ 1.44
VPS53-216ENST00000574029 IGSF9BQ9UPX0 1349 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 KDM3AQ9Y4C1 1321 aa24.05■■□□□ 1.44
VPS53-216ENST00000574029 IGKV6D-21A0A0A0MT36 114 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 SMIM35A0A1B0GVV1 85 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 M0QZ92 97 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 ZBTB43O43298 467 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 MMP1P03956 469 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 SREBF1P36956 1147 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 CLK2P49760 499 aaKnown RBP24.04■■□□□ 1.44
VPS53-216ENST00000574029 SLC26A2P50443 739 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 TMEM62Q0P6H9 643 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 TSGA10IPQ3SY00 556 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 BMP2KLQ5H9B9 411 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 DHX32Q7L7V1 743 aaKnown RBP24.04■■□□□ 1.44
VPS53-216ENST00000574029 NPAS4Q8IUM7 802 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 CMTR2Q8IYT2 770 aaKnown RBP24.04■■□□□ 1.44
VPS53-216ENST00000574029 P2RX5Q93086 422 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 CELF4Q9BZC1 486 aaKnown RBP24.04■■□□□ 1.44
VPS53-216ENST00000574029 BARHL2Q9NY43 387 aa24.04■■□□□ 1.44
VPS53-216ENST00000574029 SMCO2A6NFE2 343 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 PRR33A8MZF0 331 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 ALADP13716 330 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 ZP2Q05996 745 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 AP3B2Q13367 1082 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 MTHFD1LQ6UB35 978 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 NME8Q8N427 588 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 TCEANC2Q96MN5 208 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 TMEM260Q9NX78 707 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 PLAGL2Q9UPG8 496 aa24.03■■□□□ 1.44
VPS53-216ENST00000574029 MRPL42Q9Y6G3 142 aaKnown RBP24.03■■□□□ 1.44
VPS53-216ENST00000574029 C19orf67A6NJJ6 358 aa24.02■■□□□ 1.44
VPS53-216ENST00000574029 PAK2Q13177 524 aa24.02■■□□□ 1.44
VPS53-216ENST00000574029 CAMK1Q14012 370 aa24.02■■□□□ 1.44
VPS53-216ENST00000574029 NIPA1Q7RTP0 329 aa24.02■■□□□ 1.44
VPS53-216ENST00000574029 GLT8D2Q9H1C3 349 aa24.02■■□□□ 1.44
VPS53-216ENST00000574029 ALG13Q9NP73 1137 aaKnown RBP24.02■■□□□ 1.44
VPS53-216ENST00000574029 FAM217BQ9NTX9 383 aaPredicted RBP24.02■■□□□ 1.44
VPS53-216ENST00000574029 CCNE2O96020 404 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 STAG3L1P0CL83 205 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 KRT76Q01546 638 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 DLX2Q07687 328 aaPredicted RBP24.01■■□□□ 1.43
VPS53-216ENST00000574029 ADCK5Q3MIX3 580 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 NAALADL2Q58DX5 795 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 ABHD15Q6UXT9 468 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 RASEFQ8IZ41 740 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 TMX1Q9H3N1 280 aa24.01■■□□□ 1.43
VPS53-216ENST00000574029 MYO7AQ13402 2215 aa24■■□□□ 1.43
VPS53-216ENST00000574029 GOLGA8AA7E2F4 631 aa24■■□□□ 1.43
VPS53-216ENST00000574029 GOLGA8BA8MQT2 603 aa24■■□□□ 1.43
VPS53-216ENST00000574029 SCG2P13521 617 aa24■■□□□ 1.43
VPS53-216ENST00000574029 HOXD11P31277 338 aaPredicted RBP24■■□□□ 1.43
VPS53-216ENST00000574029 RCAN1P53805 252 aa24■■□□□ 1.43
VPS53-216ENST00000574029 FAM43BQ6ZT52 329 aaPredicted RBP24■■□□□ 1.43
VPS53-216ENST00000574029 ADHFE1Q8IWW8 467 aa24■■□□□ 1.43
VPS53-216ENST00000574029 KLF18A0A0U1RQI7 1052 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 FAM86B1E9PN63 330 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 HBP1O60381 514 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 FAM86B2P0C5J1 330 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 KLRC1P26715 233 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 CDC27P30260 824 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 GTF2F1P35269 517 aaKnown RBP eCLIP23.99■■□□□ 1.43
VPS53-216ENST00000574029 ZNF76P36508 570 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 SMAD2Q15796 467 aaKnown RBP23.99■■□□□ 1.43
VPS53-216ENST00000574029 FAM160B1Q5W0V3 765 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 SPPL3Q8TCT6 385 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 ATP8B4Q8TF62 1192 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 CRYGNQ8WXF5 182 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 COL1A2P08123 1366 aa23.99■■□□□ 1.43
VPS53-216ENST00000574029 DDX39AO00148 427 aaKnown RBP23.98■■□□□ 1.43
VPS53-216ENST00000574029 DHX15O43143 795 aaKnown RBP23.98■■□□□ 1.43
VPS53-216ENST00000574029 MBTPS2O43462 519 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 DCXO43602 365 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 TBX10O75333 385 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 ITGB1P05556 798 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 DNAJB1P25685 340 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 ADAM15Q13444 863 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 KRT32Q14532 448 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 PLA2G4DQ86XP0 818 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 CCDC60Q8IWA6 550 aaPredicted RBP23.98■■□□□ 1.43
VPS53-216ENST00000574029 IGFLR1Q9H665 355 aa23.98■■□□□ 1.43
VPS53-216ENST00000574029 IGLV3-22A0A075B6J6 115 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 BACH1O14867 736 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 LINC01565O15544 149 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 CYP3A4P08684 503 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 CLUL1Q15846 466 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 PFKFB3Q16875 520 aaPredicted RBP23.97■■□□□ 1.43
VPS53-216ENST00000574029 TMEM266Q2M3C6 531 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 PAN2Q504Q3 1202 aaKnown RBP23.97■■□□□ 1.43
VPS53-216ENST00000574029 SKAP1Q86WV1 359 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 KIAA0319LQ8IZA0 1049 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 KLHL23Q8NBE8 558 aa23.97■■□□□ 1.43
VPS53-216ENST00000574029 ERVK-5Q9HDB9 667 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms