RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ARHGEF35A5YM69 484 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 PHF20L1A8MW92 1017 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 POLR3GO15318 223 aaPredicted RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 PSMD10O75832 226 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 EYA4O95677 639 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 NR3C1P04150 777 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 TRIM49P0CI25 452 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 TRIM49CP0CI26 452 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 RNASE9P60153 205 aaKnown RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 RPS6P62753 249 aaKnown RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 MOXD1Q6UVY6 613 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 FAM83AQ86UY5 434 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 SYCP3Q8IZU3 236 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 SUGCTQ9HAC7 445 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 ARGLU1Q9NWB6 273 aaPredicted RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 ARMCX3Q9UH62 379 aaPredicted RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 RIPK3Q9Y572 518 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 PCDHA13Q9Y5I0 950 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 ZNF536O15090 1300 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 TBX3O15119 743 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 FECHP22830 423 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 CIITAP33076 1130 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 MEA1Q16626 185 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 FAM178BQ8IXR5 827 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 PRPF38AQ8NAV1 312 aaKnown RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 TRPM4Q8TD43 1214 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 SECISBP2LQ93073 1101 aaKnown RBP10.92□□□□□ -0.66
VPS53-206ENST00000570359 TEPSINQ96N21 525 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 HAUS4Q9H6D7 363 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 EHMT1Q9H9B1 1298 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 GPRC5CQ9NQ84 441 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 ZHX2Q9Y6X8 837 aa10.92□□□□□ -0.66
VPS53-206ENST00000570359 CTAGE15A4D2H0 777 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 PIK3CDO00329 1044 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 ICAM1P05362 532 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 CTAGE8P0CG41 777 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 MAGEA1P43355 309 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 MMP14P50281 582 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 SOX10P56693 466 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 SFMBT2Q5VUG0 894 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 PLA2G4FQ68DD2 849 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 PDXDC1Q6P996 788 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 CTAGE6Q86UF2 777 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 CTAGE4Q8IX94 777 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 RETREG2Q8NC44 543 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 BAP1Q92560 729 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 ELMO3Q96BJ8 720 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 SPAG5Q96R06 1193 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 PNKPQ96T60 521 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 ASTN1O14525 1302 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 K7ENM7 598 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 NOL4O94818 638 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 XRCC5P13010 732 aaKnown RBP10.91□□□□□ -0.66
VPS53-206ENST00000570359 H2AFXP16104 143 aaPredicted RBP10.91□□□□□ -0.66
VPS53-206ENST00000570359 MTMR1Q13613 665 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 TNFAIP1Q13829 316 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 TRIM59Q8IWR1 403 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 TRERF1Q96PN7 1200 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 MMS19Q96T76 1030 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 RMDN3Q96TC7 470 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 HSD17B14Q9BPX1 270 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 KIFC3Q9BVG8 833 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 PACSIN1Q9BY11 444 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 GOLPH3Q9H4A6 298 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 ADAMTS1Q9UHI8 967 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 DDX41Q9UJV9 622 aaKnown RBP10.91□□□□□ -0.66
VPS53-206ENST00000570359 PACSIN2Q9UNF0 486 aaPredicted RBP10.91□□□□□ -0.66
VPS53-206ENST00000570359 TELO2Q9Y4R8 837 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 FHOD1Q9Y613 1164 aa10.91□□□□□ -0.66
VPS53-206ENST00000570359 TMCO5BA8MYB1 307 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 CALUO43852 315 aaPredicted RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 HIP1RO75146 1068 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 CYP3A4P08684 503 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 PTGER2P43116 358 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 C2orf54Q08AI8 447 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 ITGB3BPQ13352 177 aaPredicted RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 ARHGEF16Q5VV41 709 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 GSPT2Q8IYD1 628 aaKnown RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 CLEC4DQ8WXI8 215 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 SLC5A5Q92911 643 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 MXRA8Q9BRK3 442 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 PARVGQ9HBI0 331 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 PICK1Q9NRD5 415 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 SEPT11Q9NVA2 429 aaKnown RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 GGA3Q9NZ52 723 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 PLAGL2Q9UPG8 496 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 EIF3CLB5ME19 914 aaKnown RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 TLR2O60603 784 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 ATP9AO75110 1047 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 VAV2P52735 878 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 NPEPPSP55786 919 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 KLHL30Q0D2K2 578 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 UGCGQ16739 394 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 COBLL1Q53SF7 1204 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 NFRKBQ6P4R8 1299 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 ARHGAP27Q6ZUM4 889 aa10.9□□□□□ -0.66
VPS53-206ENST00000570359 EIF3CQ99613 913 aaKnown RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 POLR3CQ9BUI4 534 aaPredicted RBP10.9□□□□□ -0.66
VPS53-206ENST00000570359 GCNT4Q9P109 453 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms