RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 LETM2Q2VYF4 491 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 LRCH2Q5VUJ6 765 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 PIK3AP1Q6ZUJ8 805 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 ETNPPLQ8TBG4 499 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 PHOSPHO2Q8TCD6 241 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 TNPO1Q92973 898 aaKnown RBP14.74□□□□□ -0.05
CNOT1-220ENST00000569916 TEKT3Q9BXF9 490 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 NKX2-4Q9H2Z4 354 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 UNC45AQ9H3U1 944 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 DDX25Q9UHL0 483 aaKnown RBP14.74□□□□□ -0.05
CNOT1-220ENST00000569916 MSRAQ9UJ68 235 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 STXBP5LQ9Y2K9 1186 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 MAFBQ9Y5Q3 323 aaPredicted RBP14.74□□□□□ -0.05
CNOT1-220ENST00000569916 EVPLQ92817 2033 aa14.74□□□□□ -0.05
CNOT1-220ENST00000569916 COL1A2P08123 1366 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 CDH23Q9H251 3354 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 CHD9Q3L8U1 2897 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 ABHD14A-ACY1A0A1B0GW23 586 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 ZBTB42B2RXF5 422 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 HBP1O60381 514 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 CHRNA1P02708 482 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 MMP1P03956 469 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 KCNJ6P48051 423 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 DEFB103AP81534 67 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 MKRN4PQ13434 485 aaPredicted RBP14.73□□□□□ -0.05
CNOT1-220ENST00000569916 RABEP1Q15276 862 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 PLEKHG4Q58EX7 1191 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 KRT40Q6A162 431 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 B3GNT9Q6UX72 402 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 HERC6Q8IVU3 1022 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 DBF4BQ8NFT6 615 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 DNAJB3Q8WWF6 145 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 ZSCAN31Q96LW9 406 aaPredicted RBP14.73□□□□□ -0.05
CNOT1-220ENST00000569916 CDX2Q99626 313 aaPredicted RBP14.73□□□□□ -0.05
CNOT1-220ENST00000569916 LLPHQ9BRT6 129 aaKnown RBP14.73□□□□□ -0.05
CNOT1-220ENST00000569916 ZNF576Q9H609 170 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 BRMS1Q9HCU9 246 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 GABBR1Q9UBS5 961 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 SAMM50Q9Y512 469 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 PCDHA11Q9Y5I1 949 aa14.73□□□□□ -0.05
CNOT1-220ENST00000569916 COL4A4P53420 1690 aaPredicted RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 CHMP2AO43633 222 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 MYOGP15173 224 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 GCFC2P16383 781 aaKnown RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 SFNP31947 248 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 JAK3P52333 1124 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 IKBKEQ14164 716 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 UGCGQ16739 394 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 PPP4R3AQ6IN85 833 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 MTHFD1LQ6UB35 978 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 RSPH3Q86UC2 560 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 BBXQ8WY36 941 aaPredicted RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 FAM49AQ9H0Q0 323 aaPredicted RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 UPF2Q9HAU5 1272 aaKnown RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 KCNMB3Q9NPA1 279 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 SH2B1Q9NRF2 756 aaPredicted RBP14.72□□□□□ -0.05
CNOT1-220ENST00000569916 DISC1Q9NRI5 854 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 PCDHA2Q9Y5H9 948 aa14.72□□□□□ -0.05
CNOT1-220ENST00000569916 ARID2Q68CP9 1835 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 SMIM35A0A1B0GVV1 85 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 BTBD18B2RXH4 712 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 ZNF862O60290 1169 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 CCNT1O60563 726 aaKnown RBP14.71□□□□□ -0.05
CNOT1-220ENST00000569916 EFCAB14O75071 495 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 RPLP2P05387 115 aaKnown RBP14.71□□□□□ -0.05
CNOT1-220ENST00000569916 MRPS6P82932 125 aaKnown RBP14.71□□□□□ -0.05
CNOT1-220ENST00000569916 TRIM29Q14134 588 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 GRIN2CQ14957 1233 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 ZNF484Q5JVG2 852 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 TMCO2Q7Z6W1 182 aaPredicted RBP14.71□□□□□ -0.05
CNOT1-220ENST00000569916 CKAP2LQ8IYA6 745 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 DIS3L2Q8IYB7 885 aaKnown RBP14.71□□□□□ -0.05
CNOT1-220ENST00000569916 RDM1Q8NG50 284 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 MYLIPQ8WY64 445 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 SEPT8Q92599 483 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 SLC28A3Q9HAS3 691 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 CDY2AQ9Y6F7 541 aa14.71□□□□□ -0.05
CNOT1-220ENST00000569916 C22orf31O95567 290 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 CA3P07451 260 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 GHRP10912 638 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 KLRC1P26715 233 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 PRKCEQ02156 737 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 LPIN1Q14693 890 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 FBXO47Q5MNV8 452 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 PPP2R2DQ66LE6 453 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.7□□□□□ -0.06
CNOT1-220ENST00000569916 MIER3Q7Z3K6 550 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 POTEDQ86YR6 584 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 FAM167AQ96KS9 214 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 TBC1D32Q96NH3 1257 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 NAP1L4Q99733 375 aaKnown RBP14.7□□□□□ -0.06
CNOT1-220ENST00000569916 IFIH1Q9BYX4 1025 aaKnown RBP14.7□□□□□ -0.06
CNOT1-220ENST00000569916 VAV3Q9UKW4 847 aa14.7□□□□□ -0.06
CNOT1-220ENST00000569916 COL6A3P12111 3177 aa14.69□□□□□ -0.06
CNOT1-220ENST00000569916 WNT7AO00755 349 aa14.69□□□□□ -0.06
CNOT1-220ENST00000569916 TBX3O15119 743 aa14.69□□□□□ -0.06
CNOT1-220ENST00000569916 ST18O60284 1047 aa14.69□□□□□ -0.06
CNOT1-220ENST00000569916 ARHGEF15O94989 841 aa14.69□□□□□ -0.06
CNOT1-220ENST00000569916 CD2BP2O95400 341 aaKnown RBP14.69□□□□□ -0.06
CNOT1-220ENST00000569916 OATP04181 439 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms