RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	PDE6C	P51160	858 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	APTX	Q7Z2E3	356 aa	Known RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	SAAL1	Q96ER3	474 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	IQCG	Q9H095	443 aa	Known RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	DDX20	Q9UHI6	824 aa	Known RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	WTIP	A6NIX2	430 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	FER	P16591	822 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	IL6ST	P40189	918 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	BIRC2	Q13490	618 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	C6orf118	Q5T5N4	469 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	GLG1	Q92896	1179 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	VPS37B	Q9H9H4	285 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	NOD2	Q9HC29	1040 aa		12.37	□□□□□ -0.43
CLN3-238	ENST00000569430	KDM3A	Q9Y4C1	1321 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	TCRBV5S4A2T	A0A5A2	114 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	POTEB3	A0JP26	581 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	POTEC	B2RU33	542 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ATP2A1	O14983	1001 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	GAS8	O95995	478 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	IFNB1	P01574	187 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	BCR	P11274	1271 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	NAB2	Q15742	525 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ERFE	Q4G0M1	354 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	POTEB	Q6S5H4	581 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	DPP8	Q6V1X1	898 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ADGRA1	Q86SQ6	560 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	MTR	Q99707	1265 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ISCU	Q9H1K1	167 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	KBTBD4	Q9NVX7	518 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	LRRD1	A4D1F6	860 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	EVI5	O60447	810 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PLCG2	P16885	1265 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PAX7	P23759	505 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PTK2	Q05397	1052 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	DRP2	Q13474	957 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CAPRIN2	Q6IMN6	1127 aa	Known RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	KCTD1	Q719H9	257 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	FAM186B	Q8IYM0	893 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PPM1K	Q8N3J5	372 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	RAD54L	Q92698	747 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	C7orf25	Q9BPX7	421 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ECT2	Q9H8V3	914 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	METTL14	Q9HCE5	456 aa	Known RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	SH3GLB2	Q9NR46	395 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PASK	Q96RG2	1323 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CCT8L1P	A6NM43	557 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PRLR	P16471	622 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CDC25C	P30307	473 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CRKL	P46109	303 aa	Known RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	PSMD2	Q13200	908 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	MEA1	Q16626	185 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CNPY4	Q8N129	248 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	CAVIN3	Q969G5	261 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	DDX23	Q9BUQ8	820 aa	Known RBP	12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	ETNK1	Q9HBU6	452 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	HOMER2	Q9NSB8	354 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430	L3MBTL1	Q9Y468	752 aa		12.36	□□□□□ -0.43
CLN3-238	ENST00000569430		A0A1W2PQJ5	194 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	UFL1	O94874	794 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	LMNB1	P20700	586 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	BTD	P43251	543 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	METTL13	Q8N6R0	699 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	PPP1R14C	Q8TAE6	165 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF507	Q8TCN5	953 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	RUBCN	Q92622	972 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	BICD1	Q96G01	975 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	PLA2G12B	Q9BX93	195 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	DONSON	Q9NYP3	566 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	PCDHA1	Q9Y5I3	950 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	USP17L5	A8MUK1	530 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	TCP11X1	B4DZS4	312 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ITGA4	P13612	1032 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	GCFC2	P16383	781 aa	Known RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	SKOR1	P84550	965 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	TNIP1	Q15025	636 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	RBBP5	Q15291	538 aa	Known RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF746	Q6NUN9	644 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	SRRM1	Q8IYB3	904 aa	Known RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	CCDC127	Q96BQ5	260 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	RUNDC3B	Q96NL0	473 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	GPR101	Q96P66	508 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	RAB3IP	Q96QF0	476 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	TMBIM4	Q9HC24	238 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	WDR91	A4D1P6	747 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	POLE2	P56282	527 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ERVK-9	P63128	1117 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	IL17A	Q16552	155 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ARMC2	Q8NEN0	867 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ADAM33	Q9BZ11	813 aa		12.35	□□□□□ -0.43
CLN3-238	ENST00000569430	ADCY2	Q08462	1091 aa		12.34	□□□□□ -0.43
CLN3-238	ENST00000569430	C10orf76	Q5T2E6	689 aa		12.34	□□□□□ -0.43
CLN3-238	ENST00000569430	SWT1	Q5T5J6	900 aa	Known RBP	12.34	□□□□□ -0.43
CLN3-238	ENST00000569430	FYB2	Q5VWT5	728 aa		12.34	□□□□□ -0.43
CLN3-238	ENST00000569430	NSMF	Q6X4W1	530 aa		12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms