RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MLXIPLQ9NP71 852 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 OSGEPQ9NPF4 335 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 GGA1Q9UJY5 639 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 CLTAP09496 248 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 HOXA13P31271 388 aaPredicted RBP15.78■□□□□ 0.12
VPS35-210ENST00000568784 PSMC6P62333 389 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 CCDC38Q502W7 563 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 CCDC13Q8IYE1 715 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 GLG1Q92896 1179 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 NCAPGQ9BPX3 1015 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 CD209Q9NNX6 404 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 PNMA2Q9UL42 364 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 PJA2O43164 708 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 SKOR1P84550 965 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 MTMR9Q96QG7 549 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 MXD3Q9BW11 206 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 BCAS3Q9H6U6 928 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 KLC4Q9NSK0 619 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 NAGPAQ9UK23 515 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 GLI3P10071 1580 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 DCDC2CA8MYV0 355 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 FXR2P51116 673 aaKnown RBP eCLIP15.78■□□□□ 0.127e-7■■■■□ 20.8
VPS35-210ENST00000568784 ITIH3Q06033 890 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 FAM133BQ5BKY9 247 aaKnown RBP15.78■□□□□ 0.12
VPS35-210ENST00000568784 INPP4AQ96PE3 977 aaPredicted RBP15.78■□□□□ 0.12
VPS35-210ENST00000568784 FMO2Q99518 471 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 HIBCHQ6NVY1 386 aaPredicted RBP15.78■□□□□ 0.12
VPS35-210ENST00000568784 OTUD6AQ7L8S5 288 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.78■□□□□ 0.124e-6■■■□□ 14.6
VPS35-210ENST00000568784 NEUROG2Q9H2A3 272 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 JMJD4Q9H9V9 463 aa15.78■□□□□ 0.12
VPS35-210ENST00000568784 KDM3AQ9Y4C1 1321 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 COL18A1P39060 1754 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 FAM107AO95990 144 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 TRIM49P0CI25 452 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 TRIM49CP0CI26 452 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 RPL13P26373 211 aaKnown RBP15.77■□□□□ 0.12
VPS35-210ENST00000568784 GBP2P32456 591 aaPredicted RBP15.77■□□□□ 0.12
VPS35-210ENST00000568784 VPS41P49754 854 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 PPP2R2AP63151 447 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 KCNV1Q6PIU1 500 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 TRIM59Q8IWR1 403 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 USP40Q9NVE5 1235 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 MTMR4Q9NYA4 1195 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 DISP2A7MBM2 1401 aa15.77■□□□□ 0.12
VPS35-210ENST00000568784 PNMA6FA0A0J9YX94 578 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 DDX39AO00148 427 aaKnown RBP15.77■□□□□ 0.11
VPS35-210ENST00000568784 CALUO43852 315 aaPredicted RBP15.77■□□□□ 0.11
VPS35-210ENST00000568784 MED24O75448 989 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 MAP2K1Q02750 393 aaPredicted RBP15.77■□□□□ 0.11
VPS35-210ENST00000568784 KCNA1Q09470 495 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 DOK7Q18PE1 504 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 ZNF746Q6NUN9 644 aaPredicted RBP15.77■□□□□ 0.11
VPS35-210ENST00000568784 SLF2Q8IX21 1173 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 DNAJC19Q96DA6 116 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 PBKQ96KB5 322 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 CEP63Q96MT8 703 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 KCNK9Q9NPC2 374 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 RGL1Q9NZL6 768 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 USP11P51784 963 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 PDIA5Q14554 519 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 ASPRV1Q53RT3 343 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 C16orf86Q6ZW13 317 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 SPICE1Q8N0Z3 855 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 ISCUQ9H1K1 167 aa15.77■□□□□ 0.11
VPS35-210ENST00000568784 RGS16O15492 202 aaPredicted RBP15.76■□□□□ 0.11
VPS35-210ENST00000568784 CYP11B2P19099 503 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 GALCP54803 685 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 MTMR3Q13615 1198 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 CTTNQ14247 550 aaKnown RBP15.76■□□□□ 0.11
VPS35-210ENST00000568784 NBPF9Q3BBW0 867 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 DENND2CQ68D51 928 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 KIRREL3Q8IZU9 778 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 ANKRD42Q8N9B4 389 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 TMBIM4Q9HC24 238 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 ZBTB21Q9ULJ3 1066 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 DAAM1Q9Y4D1 1078 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 TTLL1O95922 423 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 HLA-DOAP06340 250 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 ZNF844Q08AG5 666 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 CUL1Q13616 776 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 QPCTQ16769 361 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 HAS1Q92839 578 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 PAIP2Q9BPZ3 127 aaKnown RBP15.76■□□□□ 0.11
VPS35-210ENST00000568784 ANO3Q9BYT9 981 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 EDEM3Q9BZQ6 932 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 DHX36Q9H2U1 1008 aaKnown RBP15.76■□□□□ 0.11
VPS35-210ENST00000568784 SLC40A1Q9NP59 571 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 TAF1P21675 1872 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 GPSM2P81274 684 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 REEP2Q9BRK0 252 aa15.76■□□□□ 0.11
VPS35-210ENST00000568784 NR3C1P04150 777 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 EZRP15311 586 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 SSR1P43307 286 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 MESDQ14696 234 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 ASTE1Q2TB18 679 aaPredicted RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 SPATS2Q86XZ4 545 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 SEC16BQ96JE7 1060 aa15.75■□□□□ 0.11
VPS35-210ENST00000568784 ELAC2Q9BQ52 826 aaKnown RBP15.75■□□□□ 0.11
VPS35-210ENST00000568784 RTFDC1Q9BY42 306 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms