RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 PLA2G5P39877 138 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 CLK2P49760 499 aaKnown RBP17.03■□□□□ 0.32
CLN3-236ENST00000568558 STAT5BP51692 787 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 TMEM62Q0P6H9 643 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 BTG3Q14201 252 aaPredicted RBP17.03■□□□□ 0.32
CLN3-236ENST00000568558 ADCK5Q3MIX3 580 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 GJD3Q8N144 294 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 C11orf16Q9NQ32 467 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 FAM217BQ9NTX9 383 aaPredicted RBP17.03■□□□□ 0.32
CLN3-236ENST00000568558 TMEM260Q9NX78 707 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 BARHL2Q9NY43 387 aa17.03■□□□□ 0.32
CLN3-236ENST00000568558 IGSF9BQ9UPX0 1349 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 IGKV6D-21A0A0A0MT36 114 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 KLF18A0A0U1RQI7 1052 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 M0QZ92 97 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 GPR37L1O60883 481 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 CDC27P30260 824 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 SLC26A2P50443 739 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 RCAN1P53805 252 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 RTN4RL1Q86UN2 441 aaPredicted RBP17.02■□□□□ 0.32
CLN3-236ENST00000568558 CRIPAKQ8N1N5 446 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 FTHL17Q9BXU8 183 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 GLT8D2Q9H1C3 349 aa17.02■□□□□ 0.32
CLN3-236ENST00000568558 KDM3AQ9Y4C1 1321 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 SMIM35A0A1B0GVV1 85 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 POTEB3A0JP26 581 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 KRT32Q14532 448 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 POTEBQ6S5H4 581 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 EP400NLQ6ZTU2 488 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 NIPA1Q7RTP0 329 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 PLVAPQ9BX97 442 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 CELF4Q9BZC1 486 aaKnown RBP17.01■□□□□ 0.31
CLN3-236ENST00000568558 CLDND1Q9NY35 253 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 PADI3Q9ULW8 664 aa17.01■□□□□ 0.31
CLN3-236ENST00000568558 FAM86C2PA6NEL3 165 aa17■□□□□ 0.31
CLN3-236ENST00000568558 DDX39AO00148 427 aaKnown RBP17■□□□□ 0.31
CLN3-236ENST00000568558 CCNE2O96020 404 aa17■□□□□ 0.31
CLN3-236ENST00000568558 MMP1P03956 469 aa17■□□□□ 0.31
CLN3-236ENST00000568558 SSTR3P32745 418 aaPredicted RBP17■□□□□ 0.31
CLN3-236ENST00000568558 ZNF76P36508 570 aa17■□□□□ 0.31
CLN3-236ENST00000568558 LTBRP36941 435 aa17■□□□□ 0.31
CLN3-236ENST00000568558 PAK2Q13177 524 aa17■□□□□ 0.31
CLN3-236ENST00000568558 CTC1Q2NKJ3 1217 aa17■□□□□ 0.31
CLN3-236ENST00000568558 MTHFD1LQ6UB35 978 aa17■□□□□ 0.31
CLN3-236ENST00000568558 ABHD15Q6UXT9 468 aa17■□□□□ 0.31
CLN3-236ENST00000568558 CENPQQ7L2Z9 268 aaPredicted RBP17■□□□□ 0.31
CLN3-236ENST00000568558 NPAS4Q8IUM7 802 aa17■□□□□ 0.31
CLN3-236ENST00000568558 CMTR2Q8IYT2 770 aaKnown RBP17■□□□□ 0.31
CLN3-236ENST00000568558 NME8Q8N427 588 aa17■□□□□ 0.31
CLN3-236ENST00000568558 CRYGNQ8WXF5 182 aa17■□□□□ 0.31
CLN3-236ENST00000568558 P2RX5Q93086 422 aa17■□□□□ 0.31
CLN3-236ENST00000568558 FAM122AQ96E09 287 aa17■□□□□ 0.31
CLN3-236ENST00000568558 MRPL42Q9Y6G3 142 aaKnown RBP17■□□□□ 0.31
CLN3-236ENST00000568558 COL1A2P08123 1366 aa17■□□□□ 0.31
CLN3-236ENST00000568558 C5orf42Q9H799 3197 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 IGLV3-22A0A075B6J6 115 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 FAM86B1E9PN63 330 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 NCK2O43639 380 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 HBP1O60381 514 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 CDC45O75419 566 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 HMGB1P09429 215 aaKnown RBP16.99■□□□□ 0.31
CLN3-236ENST00000568558 FAM86B2P0C5J1 330 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 SCG2P13521 617 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 KRT76Q01546 638 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 HYAL1Q12794 435 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 PFKFB3Q16875 520 aaPredicted RBP16.99■□□□□ 0.31
CLN3-236ENST00000568558 JAKMIP3Q5VZ66 844 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 FAM160B1Q5W0V3 765 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 PLA2G4DQ86XP0 818 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 CCDC60Q8IWA6 550 aaPredicted RBP16.99■□□□□ 0.31
CLN3-236ENST00000568558 ATP8B4Q8TF62 1192 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 FAM50BQ9Y247 325 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 HCN4Q9Y3Q4 1203 aa16.99■□□□□ 0.31
CLN3-236ENST00000568558 ESYT2A0FGR8 921 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 BACH1O14867 736 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 DHX15O43143 795 aaKnown RBP16.98■□□□□ 0.31
CLN3-236ENST00000568558 CYP3A4P08684 503 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 STAG3L1P0CL83 205 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 KLRC1P26715 233 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 ADD1P35611 737 aaKnown RBP16.98■□□□□ 0.31
CLN3-236ENST00000568558 METAP2P50579 478 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLN3-236ENST00000568558 CAMK1Q14012 370 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 TMX1Q9H3N1 280 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 ALG13Q9NP73 1137 aaKnown RBP16.98■□□□□ 0.31
CLN3-236ENST00000568558 ZNF302Q9NR11 478 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 PRKAG3Q9UGI9 489 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 NAP1L2Q9ULW6 460 aaPredicted RBP16.98■□□□□ 0.31
CLN3-236ENST00000568558 PLAGL2Q9UPG8 496 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 ARIH1Q9Y4X5 557 aaPredicted RBP16.98■□□□□ 0.31
CLN3-236ENST00000568558 NID2Q14112 1375 aa16.98■□□□□ 0.31
CLN3-236ENST00000568558 IPO5O00410 1097 aaKnown RBP16.97■□□□□ 0.31
CLN3-236ENST00000568558 ADAMTS3O15072 1205 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 CPA1P15085 419 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 ZP2Q05996 745 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 DLX2Q07687 328 aaPredicted RBP16.97■□□□□ 0.31
CLN3-236ENST00000568558 APOBRQ0VD83 1088 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 TMEM266Q2M3C6 531 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 PAN2Q504Q3 1202 aaKnown RBP16.97■□□□□ 0.31
CLN3-236ENST00000568558 NAALADL2Q58DX5 795 aa16.97■□□□□ 0.31
CLN3-236ENST00000568558 CCDC196A0A1B0GTZ2 297 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms