RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 EMID1Q96A84 441 aaPredicted RBP15.12■□□□□ 0.01
VPS39-206ENST00000562662 GPR20Q99678 358 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 RUSC1Q9BVN2 902 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 SAGE1Q9NXZ1 904 aa15.12■□□□□ 0.01
VPS39-206ENST00000562662 MAFBQ9Y5Q3 323 aaPredicted RBP15.12■□□□□ 0.01
VPS39-206ENST00000562662 NPHP3-ACAD11A0A0J9YXS1 232 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 FRMD3A2A2Y4 597 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 GPR25O00155 361 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 DKC1O60832 514 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS39-206ENST00000562662 LGR5O75473 907 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 GH1P01241 217 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 SMPD1P17405 629 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 YWHABP31946 246 aaKnown RBP15.11■□□□□ 0.01
VPS39-206ENST00000562662 CYP2C19P33261 490 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 FLT3LGP49771 235 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 RARRES1P49788 294 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 PRKCZQ05513 592 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 EHHADHQ08426 723 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 GIT2Q14161 759 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 CCDC144BQ3MJ40 725 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 HSDL1Q3SXM5 330 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 DUSP28Q4G0W2 176 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 PRAMEF19Q5SWL8 479 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 GJC2Q5T442 439 aaPredicted RBP15.11■□□□□ 0.01
VPS39-206ENST00000562662 ZNF658Q5TYW1 1059 aaPredicted RBP15.11■□□□□ 0.01
VPS39-206ENST00000562662 IQSEC1Q6DN90 963 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 C1orf186Q6ZWK4 172 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 RNF214Q8ND24 703 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 CD99L2Q8TCZ2 262 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 AFAP1L1Q8TED9 768 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 CBX8Q9HC52 389 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 ZNF302Q9NR11 478 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 ANKEF1Q9NU02 776 aa15.11■□□□□ 0.01
VPS39-206ENST00000562662 BACH1O14867 736 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 NKRFO15226 690 aaKnown RBP eCLIP15.1■□□□□ 0.01
VPS39-206ENST00000562662 ADCY6O43306 1168 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 HSPA6P17066 643 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 ATP4AP20648 1035 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 TCF7P36402 384 aaPredicted RBP15.1■□□□□ 0.01
VPS39-206ENST00000562662 ZNF165P49910 485 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 PRKCEQ02156 737 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 LAMC2Q13753 1193 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 IQCB1Q15051 598 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 ANO5Q75V66 913 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 SMYD4Q8IYR2 804 aaPredicted RBP15.1■□□□□ 0.01
VPS39-206ENST00000562662 MLKLQ8NB16 471 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 CCDC47Q96A33 483 aaKnown RBP15.1■□□□□ 0.01
VPS39-206ENST00000562662 SPATA33Q96N06 139 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 BPIFA3Q9BQP9 254 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 REEP2Q9BRK0 252 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 GRPEL1Q9HAV7 217 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 BMP2KQ9NSY1 1161 aaPredicted RBP15.1■□□□□ 0.01
VPS39-206ENST00000562662 EXOC1Q9NV70 894 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 EMSYQ7Z589 1322 aa15.1■□□□□ 0.01
VPS39-206ENST00000562662 ARHGEF35A5YM69 484 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 TMEM150BA6NC51 233 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 PPP1R3GB7ZBB8 358 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 NOP56O00567 594 aaKnown RBP15.09■□□□□ 0.01
VPS39-206ENST00000562662 CD44P16070 742 aaKnown RBP15.09■□□□□ 0.01
VPS39-206ENST00000562662 CACNB1Q02641 598 aaPredicted RBP15.09■□□□□ 0.01
VPS39-206ENST00000562662 COASYQ13057 564 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 FAM160B1Q5W0V3 765 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 PLA2G4FQ68DD2 849 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 TRIB2Q92519 343 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 KCND2Q9NZV8 630 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 GDAQ9Y2T3 454 aa15.09■□□□□ 0.01
VPS39-206ENST00000562662 OATP04181 439 aa15.08■□□□□ 0
VPS39-206ENST00000562662 KRT18P05783 430 aaKnown RBP15.08■□□□□ 0
VPS39-206ENST00000562662 IDEP14735 1019 aa15.08■□□□□ 0
VPS39-206ENST00000562662 GUCY2CP25092 1073 aa15.08■□□□□ 0
VPS39-206ENST00000562662 MRE11P49959 708 aa15.08■□□□□ 0
VPS39-206ENST00000562662 STAT5BP51692 787 aa15.08■□□□□ 0
VPS39-206ENST00000562662 TNFAIP2Q03169 654 aa15.08■□□□□ 0
VPS39-206ENST00000562662 RAD51AP2Q09MP3 1159 aa15.08■□□□□ 0
VPS39-206ENST00000562662 STK4Q13043 487 aa15.08■□□□□ 0
VPS39-206ENST00000562662 XKR3Q5GH77 459 aa15.08■□□□□ 0
VPS39-206ENST00000562662 UTP14CQ5TAP6 766 aaKnown RBP15.08■□□□□ 0
VPS39-206ENST00000562662 PADI6Q6TGC4 694 aa15.08■□□□□ 0
VPS39-206ENST00000562662 DHX40Q8IX18 779 aaKnown RBP15.08■□□□□ 0
VPS39-206ENST00000562662 CCDC65Q8IXS2 484 aa15.08■□□□□ 0
VPS39-206ENST00000562662 TRPV1Q8NER1 839 aa15.08■□□□□ 0
VPS39-206ENST00000562662 PPTC7Q8NI37 304 aa15.08■□□□□ 0
VPS39-206ENST00000562662 NAT10Q9H0A0 1025 aaKnown RBP15.08■□□□□ 0
VPS39-206ENST00000562662 PANK4Q9NVE7 773 aa15.08■□□□□ 0
VPS39-206ENST00000562662 SRRDQ9UH36 339 aa15.08■□□□□ 0
VPS39-206ENST00000562662 NRBP1Q9UHY1 535 aa15.08■□□□□ 0
VPS39-206ENST00000562662 DACH1Q9UI36 760 aa15.08■□□□□ 0
VPS39-206ENST00000562662 GNEQ9Y223 722 aaKnown RBP15.08■□□□□ 0
VPS39-206ENST00000562662 KAT6AQ92794 2004 aa15.08■□□□□ 0
VPS39-206ENST00000562662 RSPH10B2B2RC85 870 aa15.07■□□□□ 0
VPS39-206ENST00000562662 FKTNO75072 461 aa15.07■□□□□ 0
VPS39-206ENST00000562662 RSPH10BP0C881 870 aa15.07■□□□□ 0
VPS39-206ENST00000562662 HOXD8P13378 290 aaPredicted RBP15.07■□□□□ 0
VPS39-206ENST00000562662 CYBAP13498 195 aa15.07■□□□□ 0
VPS39-206ENST00000562662 NPEPPSP55786 919 aa15.07■□□□□ 0
VPS39-206ENST00000562662 C1QTNF8P60827 252 aa15.07■□□□□ 0
VPS39-206ENST00000562662 MAPK7Q13164 816 aa15.07■□□□□ 0
VPS39-206ENST00000562662 PSMD2Q13200 908 aa15.07■□□□□ 0
VPS39-206ENST00000562662 COBLL1Q53SF7 1204 aa15.07■□□□□ 0
VPS39-206ENST00000562662 XKR9Q5GH70 373 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms