RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RPF1Q9H9Y2 349 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 SPDYE16A6NNV3 312 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 ZNF286BP0CG31 522 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 BCRP11274 1271 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 ZNF280AP59817 542 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 ATP2C1P98194 919 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 LMBRD2Q68DH5 695 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 SHC4Q6S5L8 630 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 CNOT6LQ96LI5 555 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 NOX5Q96PH1 765 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 GCOM2Q9BZD3 368 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 SAMSN1Q9NSI8 373 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 ERAP1Q9NZ08 941 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 MAN1B1Q9UKM7 699 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 SETD1AO15047 1707 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 DLG5Q8TDM6 1919 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 TRIM49BA6NDI0 452 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 CCDC85CA6NKD9 419 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 AKR1B15C9JRZ8 316 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 STRNO43815 780 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 HIP1RO75146 1068 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 CLCN3P51790 818 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 SPRYD7Q5W111 196 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 TYW1BQ6NUM6 668 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 MSANTD4Q8NCY6 345 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 P2RX5Q93086 422 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 TUBGCP2Q9BSJ2 902 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 P4HA1P13674 534 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 THPOP40225 353 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 LAMC2Q13753 1193 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 FAM149B1Q96BN6 582 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PPP1R9BQ96SB3 815 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PORCNQ9H237 461 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 HMX1Q9NP08 348 aaPredicted RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 STARD7Q9NQZ5 370 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 RIPK3Q9Y572 518 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 TOPAZ1Q8N9V7 1692 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PHRF1Q9P1Y6 1649 aaKnown RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 NEFHP12036 1026 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 TNNC1P63316 161 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 NTRK3Q16288 839 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 EFCAB12Q6NXP0 572 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 CXCL17Q6UXB2 119 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 DSTYKQ6XUX3 929 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 HAUS6Q7Z4H7 955 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PSMB7Q99436 277 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 KIFC3Q9BVG8 833 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 ALDH8A1Q9H2A2 487 aaPredicted RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 CICQ96RK0 1608 aaPredicted RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 ZNF233A6NK53 670 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 XPOTO43592 962 aaKnown RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 U2AF2P26368 475 aaKnown RBP eCLIP10.1□□□□□ -0.793e-6■□□□□ 8.2
VPS39-205ENST00000562258 ACTN2P35609 894 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PSMC2P35998 433 aaKnown RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 STAT1P42224 750 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 ASIC2Q16515 512 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 EXOC3L4Q17RC7 722 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.1□□□□□ -0.79
VPS39-205ENST00000562258 GBP6Q6ZN66 633 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 DEFB128Q7Z7B8 93 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 KSR1Q8IVT5 923 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 GOLGA1Q92805 767 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 MAP3K14Q99558 947 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 SLITRK6Q9H5Y7 841 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 TMEM206Q9H813 350 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 SLC38A10Q9HBR0 1119 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 GPRC5CQ9NQ84 441 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 PXMP2Q9NR77 195 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 HESX1Q9UBX0 185 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 DNAI1Q9UI46 699 aa10.1□□□□□ -0.79
VPS39-205ENST00000562258 H3BRB1 525 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 FKBP1BP68106 108 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 FAM193AP78312 1265 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 KIZQ2M2Z5 673 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 C11orf57Q6ZUT1 292 aaPredicted RBP10.09□□□□□ -0.79
VPS39-205ENST00000562258 ZSCAN30Q86W11 494 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 CD99L2Q8TCZ2 262 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 RAD54LQ92698 747 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 ERO1AQ96HE7 468 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 ANKRD36BP1Q96IX9 119 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 GOLPH3LQ9H4A5 285 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TUT1Q9H6E5 874 aaKnown RBP10.09□□□□□ -0.79
VPS39-205ENST00000562258 XPNPEP3Q9NQH7 507 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TMEM150BA6NC51 233 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 PRR29P0C7W0 189 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 CASQ1P31415 396 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 PKN1Q16512 942 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 SPATA1Q5VX52 437 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 CNGA4Q8IV77 575 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 GLYCTKQ8IVS8 523 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 KIF18AQ8NI77 898 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 TRAPPC12Q8WVT3 735 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 WDR18Q9BV38 432 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 ABHD16BQ9H3Z7 469 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 DNAJC18Q9H819 358 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 METTL14Q9HCE5 456 aaKnown RBP10.09□□□□□ -0.79
VPS39-205ENST00000562258 SETD4Q9NVD3 440 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 CAPN9O14815 690 aa10.09□□□□□ -0.79
VPS39-205ENST00000562258 SPOPO43791 374 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms