RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TAF2Q6P1X5 1199 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 Q6ZUG5 572 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 SEPT1Q8WYJ6 367 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 CLP1Q92989 425 aaKnown RBP21.68■■□□□ 1.06
VPS35-202ENST00000561713 BRF1Q92994 677 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 CCDC136Q96JN2 1154 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 MXRA8Q9BRK3 442 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 LMAN2LQ9H0V9 348 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 IGFLR1Q9H665 355 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 KCNH7Q9NS40 1196 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 TUBE1Q9UJT0 475 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 RWDD3Q9Y3V2 267 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 SNX14Q9Y5W7 946 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 SMCO2A6NFE2 343 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 ADD1P35611 737 aaKnown RBP21.67■■□□□ 1.06
VPS35-202ENST00000561713 ITGB3BPQ13352 177 aaPredicted RBP21.67■■□□□ 1.06
VPS35-202ENST00000561713 BTG3Q14201 252 aaPredicted RBP21.67■■□□□ 1.06
VPS35-202ENST00000561713 JAKMIP3Q5VZ66 844 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 TRAPPC12Q8WVT3 735 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 DNAJB3Q8WWF6 145 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 ZNF689Q96CS4 500 aaPredicted RBP21.67■■□□□ 1.06
VPS35-202ENST00000561713 BARHL2Q9NY43 387 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 ERAP1Q9NZ08 941 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 SLC9A2Q9UBY0 812 aa21.67■■□□□ 1.06
VPS35-202ENST00000561713 LINC01565O15544 149 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 MBTPS2O43462 519 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 FBXO47Q5MNV8 452 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 MARCH8Q5T0T0 291 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 HFE2Q6ZVN8 426 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 FBXL18Q96ME1 805 aa21.66■■□□□ 1.06
VPS35-202ENST00000561713 FAM49AQ9H0Q0 323 aaPredicted RBP21.66■■□□□ 1.06
VPS35-202ENST00000561713 ALG13Q9NP73 1137 aaKnown RBP21.66■■□□□ 1.06
VPS35-202ENST00000561713 TTC3P53804 2025 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 TBX10O75333 385 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 DGKIO75912 1065 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 HSPA4P34932 840 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 SREBF1P36956 1147 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 MRE11P49959 708 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 ACTR2P61160 394 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 NHLH1Q02575 133 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 CAMK1Q14012 370 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 BLOC1S2Q6QNY1 142 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 RSPH3Q86UC2 560 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 KCNB2Q92953 911 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 UPF3BQ9BZI7 483 aaKnown RBP21.65■■□□□ 1.06
VPS35-202ENST00000561713 SMARCAD1Q9H4L7 1026 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 AGO4Q9HCK5 861 aaKnown RBP21.65■■□□□ 1.06
VPS35-202ENST00000561713 MUTYHQ9UIF7 546 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 TRPC6Q9Y210 931 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 CDY2AQ9Y6F7 541 aa21.65■■□□□ 1.06
VPS35-202ENST00000561713 NID2Q14112 1375 aa21.64■■□□□ 1.06
VPS35-202ENST00000561713 MBLAC1A4D2B0 266 aaPredicted RBP21.64■■□□□ 1.05
VPS35-202ENST00000561713 hCG_1984214I3L0E3 225 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 MMP1P03956 469 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 CLK2P49760 499 aaKnown RBP21.64■■□□□ 1.05
VPS35-202ENST00000561713 TMEM62Q0P6H9 643 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 PFKFB3Q16875 520 aaPredicted RBP21.64■■□□□ 1.05
VPS35-202ENST00000561713 CEP55Q53EZ4 464 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 TSHZ1Q6ZSZ6 1077 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 ZNF713Q8N859 430 aaPredicted RBP21.64■■□□□ 1.05
VPS35-202ENST00000561713 LINC01599Q8WXQ3 324 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 PHKBQ93100 1093 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 SDF4Q9BRK5 362 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 AGO3Q9H9G7 860 aaKnown RBP21.64■■□□□ 1.05
VPS35-202ENST00000561713 PLAGL2Q9UPG8 496 aa21.64■■□□□ 1.05
VPS35-202ENST00000561713 NFASCO94856 1347 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 HMGB1P09429 215 aaKnown RBP21.63■■□□□ 1.05
VPS35-202ENST00000561713 SCG2P13521 617 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 INSRRP14616 1297 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 DNAJB1P25685 340 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 CD52P31358 61 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 AP3B2Q13367 1082 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 ADAM15Q13444 863 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 PLCB4Q15147 1175 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 RTN4RL1Q86UN2 441 aaPredicted RBP21.63■■□□□ 1.05
VPS35-202ENST00000561713 RASGRP4Q8TDF6 673 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 PLVAPQ9BX97 442 aa21.63■■□□□ 1.05
VPS35-202ENST00000561713 MRPL42Q9Y6G3 142 aaKnown RBP21.63■■□□□ 1.05
VPS35-202ENST00000561713 FAM86B1E9PN63 330 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 CCNE2O96020 404 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 FOSP01100 380 aaPredicted RBP21.62■■□□□ 1.05
VPS35-202ENST00000561713 FAM86B2P0C5J1 330 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 RPS6KB1P23443 525 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 ZNF76P36508 570 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 RCAN1P53805 252 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 MRPS6P82932 125 aaKnown RBP21.62■■□□□ 1.05
VPS35-202ENST00000561713 SMAD4Q13485 552 aaKnown RBP21.62■■□□□ 1.05
VPS35-202ENST00000561713 RNF135Q8IUD6 432 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 CRIPAKQ8N1N5 446 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 POP1Q99575 1024 aaKnown RBP21.62■■□□□ 1.05
VPS35-202ENST00000561713 AZI2Q9H6S1 392 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 CD207Q9UJ71 328 aa21.62■■□□□ 1.05
VPS35-202ENST00000561713 PKN1Q16512 942 aa21.61■■□□□ 1.05
VPS35-202ENST00000561713 HERC4Q5GLZ8 1057 aaPredicted RBP21.61■■□□□ 1.05
VPS35-202ENST00000561713 KCNH6Q9H252 994 aa21.61■■□□□ 1.05
VPS35-202ENST00000561713 NCOA5Q9HCD5 579 aaKnown RBP21.61■■□□□ 1.05
VPS35-202ENST00000561713 USP34Q70CQ2 3546 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 MEIS1O00470 390 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 MAFGO15525 162 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 ITGB1P05556 798 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms