RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 ATXN2LQ8WWM7 1075 aaKnown RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 BBXQ8WY36 941 aaPredicted RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 TGS1Q96RS0 853 aaKnown RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 ZNF577Q9BSK1 485 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 FAM49AQ9H0Q0 323 aaPredicted RBP11.69□□□□□ -0.54
CLK3-205ENST00000561673 SUGCTQ9HAC7 445 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 SH3GLB2Q9NR46 395 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 TBC1D22BQ9NU19 505 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 MTUS1Q9ULD2 1270 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 PCDHA2Q9Y5H9 948 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 CDY2AQ9Y6F7 541 aa11.69□□□□□ -0.54
CLK3-205ENST00000561673 PTPRSQ13332 1948 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 MYO9BQ13459 2157 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 CPLX1O14810 134 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 BACH1O14867 736 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 ATP4AP20648 1035 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 CIITAP33076 1130 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 SLC26A2P50443 739 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 NLRP5P59047 1200 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 MRPS5P82675 430 aaKnown RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 MRPS6P82932 125 aaKnown RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 SETQ01105 290 aaPredicted RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 TMEM62Q0P6H9 643 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 STK3Q13188 491 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 FBXO47Q5MNV8 452 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 IER5Q5VY09 327 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 ERICH6BQ5W0A0 696 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 FAM160B1Q5W0V3 765 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 SWSAP1Q6NVH7 229 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 MIS18BP1Q6P0N0 1132 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 MTHFD1LQ6UB35 978 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 CCDC60Q8IWA6 550 aaPredicted RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 TRIM22Q8IYM9 498 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 SP7Q8TDD2 431 aaPredicted RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 GDPD5Q8WTR4 605 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 SYMPKQ92797 1274 aaKnown RBP11.68□□□□□ -0.54
CLK3-205ENST00000561673 LENG9Q96B70 501 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 ASB2Q96Q27 587 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 ZNF302Q9NR11 478 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 THEGQ9P2T0 379 aa11.68□□□□□ -0.54
CLK3-205ENST00000561673 ENPP3O14638 875 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 HBP1O60381 514 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 RPLP2P05387 115 aaKnown RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 KLRC1P26715 233 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 USP11P51784 963 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 SKIV2LQ15477 1246 aaKnown RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 ZNF746Q6NUN9 644 aaPredicted RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 PDXDC2PQ6P474 469 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 TSHZ1Q6ZSZ6 1077 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 NME8Q8N427 588 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 ATP8B4Q8TF62 1192 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 YME1L1Q96TA2 773 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 C17orf80Q9BSJ5 609 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 AGO3Q9H9G7 860 aaKnown RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 LMCD1Q9NZU5 365 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 PCDHA4Q9UN74 947 aa11.67□□□□□ -0.54
CLK3-205ENST00000561673 MAFBQ9Y5Q3 323 aaPredicted RBP11.67□□□□□ -0.54
CLK3-205ENST00000561673 SMIM35A0A1B0GVV1 85 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 ZBTB42B2RXF5 422 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 M0R2N6 131 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 MSH4O15457 936 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 DEXIO95424 95 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 CD52P31358 61 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 KRT76Q01546 638 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 TFF2Q03403 129 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 SMAP1Q8IYB5 467 aaPredicted RBP11.66□□□□□ -0.54
CLK3-205ENST00000561673 TBCKQ8TEA7 893 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 AIFM3Q96NN9 605 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 CELF4Q9BZC1 486 aaKnown RBP11.66□□□□□ -0.54
CLK3-205ENST00000561673 PCDHA10Q9Y5I2 948 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 TRPV2Q9Y5S1 764 aa11.66□□□□□ -0.54
CLK3-205ENST00000561673 M0QZ92 97 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 PSAPP07602 524 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 SCRN1Q12765 414 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 NPY5RQ15761 445 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 EPC2Q52LR7 807 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 ZNF484Q5JVG2 852 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 CPLX2Q6PUV4 134 aaKnown RBP11.65□□□□□ -0.54
CLK3-205ENST00000561673 TRMT1LQ7Z2T5 733 aaKnown RBP11.65□□□□□ -0.54
CLK3-205ENST00000561673 RTN4RL1Q86UN2 441 aaPredicted RBP11.65□□□□□ -0.54
CLK3-205ENST00000561673 CKAP2LQ8IYA6 745 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 KIAA0319LQ8IZA0 1049 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 BLIDQ8IZY5 108 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 FBXO22Q8NEZ5 403 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 GJA10Q969M2 543 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 IL17RAQ96F46 866 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 CDHR5Q9HBB8 845 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 GABBR1Q9UBS5 961 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 TPCN1Q9ULQ1 816 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 PADI3Q9ULW8 664 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 SAMM50Q9Y512 469 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 SQORQ9Y6N5 450 aa11.65□□□□□ -0.54
CLK3-205ENST00000561673 IGSF9BQ9UPX0 1349 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 CYP3A7-CYP3A51PA0A087WV96 503 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 PFKFB2O60825 505 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 DTNBO60941 627 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 CYP3A7P24462 503 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 ANAPC15P60006 121 aa11.64□□□□□ -0.55
CLK3-205ENST00000561673 Q4G0T1 1027 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms