RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 GRAPQ13588 217 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 CUL1Q13616 776 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 CHADLQ6NUI6 762 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 ADAT2Q7Z6V5 191 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 DAAM2Q86T65 1068 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 CCDC13Q8IYE1 715 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 ZNF713Q8N859 430 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 GRAPLQ8TC17 118 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 JPH2Q9BR39 696 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.44□□□□□ -0.42
SRP54-213ENST00000556994 DDX20Q9UHI6 824 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 RTCBQ9Y3I0 505 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 SBF2Q86WG5 1849 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 WNK3Q9BYP7 1800 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 GOLGB1Q14789 3259 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 GMNCA6NCL1 334 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 F8W031 263 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 CLIC2O15247 247 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 UFL1O94874 794 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 AFPP02771 609 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 ZBTB48P10074 688 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 HOXD13P35453 343 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 COPB2P35606 906 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 NOVP48745 357 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 CASP4P49662 377 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 SLC12A3P55017 1021 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 ACTN3Q08043 901 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 ZNF543Q08ER8 600 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 PABPC4Q13310 644 aaKnown RBP eCLIP12.44□□□□□ -0.421e-8■■□□□ 12.5
SRP54-213ENST00000556994 LRIG3Q6UXM1 1119 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 ARHGEF1Q92888 912 aaKnown RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 LRRC45Q96CN5 670 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 NCAPGQ9BPX3 1015 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 PAGR1Q9BTK6 254 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 IKZF4Q9H2S9 585 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 SLC12A6Q9UHW9 1150 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 NR2E1Q9Y466 385 aa12.44□□□□□ -0.42
SRP54-213ENST00000556994 COL5A3P25940 1745 aaPredicted RBP12.44□□□□□ -0.42
SRP54-213ENST00000556994 KDM3AQ9Y4C1 1321 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 ATP2C2O75185 946 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 AKAP3O75969 853 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 IBSPP21815 317 aaPredicted RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 USP8P40818 1118 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 MRPL12P52815 198 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 MAGOHP61326 146 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 KCNA1Q09470 495 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 HYIQ5T013 277 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 YTHDF3Q7Z739 585 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 SFR1Q86XK3 245 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 C1orf131Q8NDD1 294 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 U2AF1L4Q8WU68 220 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 MAGOHBQ96A72 148 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 TRIM51Q9BSJ1 452 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 VCPKMTQ9H867 229 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 OSGEPQ9NPF4 335 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 THRAP3Q9Y2W1 955 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 BTNL10A8MVZ5 291 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 RSPH10B2B2RC85 870 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 MPHOSPH10O00566 681 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 CES2O00748 559 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 RPS6KA4O75676 772 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 CLSTN1O94985 981 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 RSPH10BP0C881 870 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 SNHG28P0DPA3 235 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 XRCC5P13010 732 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 DHX9Q08211 1270 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 GIT2Q14161 759 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 IFI16Q16666 785 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 C6orf89Q6UWU4 347 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 CATSPER3Q86XQ3 398 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 ARFGAP2Q8N6H7 521 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 MDM1Q8TC05 714 aa12.43□□□□□ -0.42
SRP54-213ENST00000556994 DHX36Q9H2U1 1008 aaKnown RBP12.43□□□□□ -0.42
SRP54-213ENST00000556994 SFI1A8K8P3 1242 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 PHF20L1A8MW92 1017 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 DDX3XO00571 662 aaKnown RBP eCLIP12.42□□□□□ -0.422e-11■■■□□ 16.3
SRP54-213ENST00000556994 TRAPPC3O43617 180 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 FLOT1O75955 427 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 GFPT2O94808 682 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 H2AFZP0C0S5 128 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 PPP2R2AP63151 447 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 SETQ01105 290 aaPredicted RBP12.42□□□□□ -0.42
SRP54-213ENST00000556994 PRPF4BQ13523 1007 aaKnown RBP12.42□□□□□ -0.42
SRP54-213ENST00000556994 KNOP1Q1ED39 458 aaKnown RBP12.42□□□□□ -0.42
SRP54-213ENST00000556994 EDRF1Q3B7T1 1238 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 KRT71Q3SY84 523 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 C10orf76Q5T2E6 689 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 CCDC121Q6ZUS5 278 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 H2AFVQ71UI9 128 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 CCDC91Q7Z6B0 441 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 RAPGEF5Q92565 580 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 REEP2Q9BRK0 252 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 OSBPL7Q9BZF2 842 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 KLC4Q9NSK0 619 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 ATP8A1Q9Y2Q0 1164 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 PCDHB13Q9Y5F0 798 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 CNTNAP4Q9C0A0 1308 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 GOLGA6L7A0A1B0GV03 622 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 DNM1LO00429 736 aa12.42□□□□□ -0.42
SRP54-213ENST00000556994 ZBTB5O15062 677 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms