RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 ITGB3BPQ13352 177 aaPredicted RBP20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 PPP1R18Q6NYC8 613 aa20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 PLPPR4Q7Z2D5 763 aa20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 RTN4RL1Q86UN2 441 aaPredicted RBP20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 NPAS4Q8IUM7 802 aa20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 CMTR2Q8IYT2 770 aaKnown RBP20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 ANO3Q9BYT9 981 aa20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 AGO4Q9HCK5 861 aaKnown RBP20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 RBM28Q9NW13 759 aaKnown RBP20.9■□□□□ 0.94
VIPAS39-209ENST00000556909 TRIOO75962 3097 aa20.89■□□□□ 0.94
VIPAS39-209ENST00000556909 C19orf67A6NJJ6 358 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 DCXO43602 365 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 TBX10O75333 385 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 PAK2Q13177 524 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 CAMK1Q14012 370 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 CLUL1Q15846 466 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 CEP55Q53EZ4 464 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 SYNE3Q6ZMZ3 975 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 TEX2Q8IWB9 1127 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 ADHFE1Q8IWW8 467 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 TNPO1Q92973 898 aaKnown RBP20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 P2RX5Q93086 422 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 ALG13Q9NP73 1137 aaKnown RBP20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 PADI3Q9ULW8 664 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 PLAGL2Q9UPG8 496 aa20.89■□□□□ 0.93
VIPAS39-209ENST00000556909 PIEZO1Q92508 2521 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 KDM3AQ9Y4C1 1321 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 STXBP3O00186 592 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 FOSP01100 380 aaPredicted RBP20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 GTF2F1P35269 517 aaKnown RBP eCLIP20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 STAT5BP51692 787 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 ADCY7P51828 1080 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 FUT2Q10981 343 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 SMAD2Q15796 467 aaKnown RBP20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 RTN1Q16799 776 aa20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 CELF4Q9BZC1 486 aaKnown RBP20.88■□□□□ 0.93
VIPAS39-209ENST00000556909 SMIM35A0A1B0GVV1 85 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 LINC01565O15544 149 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 MBTPS2O43462 519 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 SCG2P13521 617 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 DNAJB1P25685 340 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 SREBF1P36956 1147 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 PAN2Q504Q3 1202 aaKnown RBP20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 MTHFD1LQ6UB35 978 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 TCEANC2Q96MN5 208 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 TMX1Q9H3N1 280 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 TMEM260Q9NX78 707 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 BRPF3Q9ULD4 1205 aa20.87■□□□□ 0.93
VIPAS39-209ENST00000556909 IGKV6D-21A0A0A0MT36 114 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 hCG_1984214I3L0E3 225 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 MEIS1O00470 390 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 ZBTB43O43298 467 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 ATG7O95352 703 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 CCNE2O96020 404 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 ITGB1P05556 798 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 STAG3L1P0CL83 205 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 SLC26A2P50443 739 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 KRT76Q01546 638 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 AP3B2Q13367 1082 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 SMAD4Q13485 552 aaKnown RBP20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 NAALADL2Q58DX5 795 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 RNF20Q5VTR2 975 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 ZNF713Q8N859 430 aaPredicted RBP20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 NEK1Q96PY6 1258 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 IGFLR1Q9H665 355 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 BARHL2Q9NY43 387 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 ZNF318Q5VUA4 2279 aa20.86■□□□□ 0.93
VIPAS39-209ENST00000556909 SMCO2A6NFE2 343 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 DDX39AO00148 427 aaKnown RBP20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 IRS1P35568 1242 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 CLK2P49760 499 aaKnown RBP20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 GATMP50440 423 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 CSPP1Q1MSJ5 1256 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 TMEM266Q2M3C6 531 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 NME8Q8N427 588 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 SPPL3Q8TCT6 385 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 UIMC1Q96RL1 719 aa20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 V9GY48 417 aaPredicted RBP20.85■□□□□ 0.93
VIPAS39-209ENST00000556909 WDFY4Q6ZS81 3184 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 EXOSC10Q01780 885 aaKnown RBP20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 ADAM15Q13444 863 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 ABHD15Q6UXT9 468 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 NIPA1Q7RTP0 329 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 ADGRD2Q7Z7M1 963 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 CCDC60Q8IWA6 550 aaPredicted RBP20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 KLHL23Q8NBE8 558 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 ATP8B4Q8TF62 1192 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 POP1Q99575 1024 aaKnown RBP20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 CD207Q9UJ71 328 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 COL1A2P08123 1366 aa20.84■□□□□ 0.93
VIPAS39-209ENST00000556909 GOLGA8AA7E2F4 631 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 GOLGA8BA8MQT2 603 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 FAM86B1E9PN63 330 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 BACH1O14867 736 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 HBP1O60381 514 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 MGEA5O60502 916 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 FAM86B2P0C5J1 330 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 KLRC1P26715 233 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 ZNF76P36508 570 aa20.83■□□□□ 0.93
VIPAS39-209ENST00000556909 SARSP49591 514 aaKnown RBP20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms