RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 RBM28Q9NW13 759 aaKnown RBP12.06□□□□□ -0.48
SHMT2-215ENST00000554656 V9GY48 417 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-215ENST00000554656 IGKV6D-21A0A0A0MT36 114 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 KLF18A0A0U1RQI7 1052 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 FAM86C2PA6NEL3 165 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 GRXCR2A6NFK2 248 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 GOLGA8AA7E2F4 631 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 GOLGA8BA8MQT2 603 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 MEIS1O00470 390 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 MAFGO15525 162 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 DGKIO75912 1065 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 ATG7O95352 703 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 TMEM62Q0P6H9 643 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 PTPROQ16827 1216 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 CEP55Q53EZ4 464 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 RNF20Q5VTR2 975 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 PTCRAQ6ISU1 281 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-215ENST00000554656 RSPH3Q86UC2 560 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 CRYGNQ8WXF5 182 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 NSUN3Q9H649 340 aaKnown RBP12.05□□□□□ -0.48
SHMT2-215ENST00000554656 BARHL2Q9NY43 387 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 TRPC6Q9Y210 931 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 TRPV2Q9Y5S1 764 aa12.05□□□□□ -0.48
SHMT2-215ENST00000554656 IGLV3-22A0A075B6J6 115 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 SMCO2A6NFE2 343 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 RRN3P2A6NIE6 340 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 ZBTB42B2RXF5 422 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 FAM86B1E9PN63 330 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 DHX15O43143 795 aaKnown RBP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 FOSP01100 380 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 FAM86B2P0C5J1 330 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 GTF2F1P35269 517 aaKnown RBP eCLIP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 BMPR1AP36894 532 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 LTBRP36941 435 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 GATMP50440 423 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 CAMK1Q14012 370 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 SYNE3Q6ZMZ3 975 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 PLPPR4Q7Z2D5 763 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 CCDC60Q8IWA6 550 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 HSCBQ8IWL3 235 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 PABPC5Q96DU9 382 aaKnown RBP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 UIMC1Q96RL1 719 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 SDF4Q9BRK5 362 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 TM6SF1Q9BZW5 370 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 TMX1Q9H3N1 280 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 PCDHA2Q9Y5H9 948 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 MRPL42Q9Y6G3 142 aaKnown RBP12.04□□□□□ -0.48
SHMT2-215ENST00000554656 IGSF9BQ9UPX0 1349 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 NID2Q14112 1375 aa12.04□□□□□ -0.48
SHMT2-215ENST00000554656 POTEB3A0JP26 581 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 PI4K2BG5E9Z4 385 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 hCG_1984214I3L0E3 225 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 DDX39AO00148 427 aaKnown RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 ST18O60284 1047 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 MGEA5O60502 916 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 RB1P06400 928 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 ATP4AP20648 1035 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 DNAJB1P25685 340 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 ADD1P35611 737 aaKnown RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 PLA2G5P39877 138 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 MCM2P49736 904 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 STAT5BP51692 787 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 DLX2Q07687 328 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 APOBRQ0VD83 1088 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 HYAL1Q12794 435 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 AP3B2Q13367 1082 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 CTC1Q2NKJ3 1217 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 JAKMIP3Q5VZ66 844 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 POTEBQ6S5H4 581 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 MTHFD1LQ6UB35 978 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 ABHD15Q6UXT9 468 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 NIPA1Q7RTP0 329 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 TEX2Q8IWB9 1127 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 ZNF713Q8N859 430 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 C11orf84Q9BUA3 381 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 CELF4Q9BZC1 486 aaKnown RBP12.03□□□□□ -0.48
SHMT2-215ENST00000554656 AZI2Q9H6S1 392 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 CDHR5Q9HBB8 845 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 PADI3Q9ULW8 664 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 SQORQ9Y6N5 450 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 KDM3AQ9Y4C1 1321 aa12.03□□□□□ -0.48
SHMT2-215ENST00000554656 TRIOO75962 3097 aa12.02□□□□□ -0.48
SHMT2-215ENST00000554656 SMIM35A0A1B0GVV1 85 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 GPR37L1O60883 481 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 TBX10O75333 385 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 CSPG5O95196 566 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 RCAN1P53805 252 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 BTG3Q14201 252 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-215ENST00000554656 PKN1Q16512 942 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 PFKFB3Q16875 520 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-215ENST00000554656 PAN2Q504Q3 1202 aaKnown RBP12.02□□□□□ -0.49
SHMT2-215ENST00000554656 TMEM31Q5JXX7 168 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 IER5Q5VY09 327 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 PLA2G4DQ86XP0 818 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 NPAS4Q8IUM7 802 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 GJD3Q8N144 294 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 TMEM40Q8WWA1 233 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 LMAN2LQ9H0V9 348 aa12.02□□□□□ -0.49
SHMT2-215ENST00000554656 ERVK-5Q9HDB9 667 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms