RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 EML1O00423 815 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 PSAPP07602 524 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 DNAJB2P25686 324 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 TMEM62Q0P6H9 643 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 FAM160B1Q5W0V3 765 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 MOXD1Q6UVY6 613 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 B3GNT9Q6UX72 402 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 CKAP2LQ8IYA6 745 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 DBF4BQ8NFT6 615 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 ATP8B4Q8TF62 1192 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 HAS1Q92839 578 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 C8orf76Q96K31 380 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 LLPHQ9BRT6 129 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 TEKT3Q9BXF9 490 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 PCDHA10Q9Y5I2 948 aa13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 MAFBQ9Y5Q3 323 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-208ENST00000554165 TMEM150BA6NC51 233 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 RRN3P2A6NIE6 340 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 PFKMP08237 780 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 ATP2A2P16615 1042 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 ATP2B1P20020 1258 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 KLRC1P26715 233 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 DEFB103AP81534 67 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 TRIM29Q14134 588 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 PPP4R3AQ6IN85 833 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 GPR153Q6NV75 609 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 MTHFD1LQ6UB35 978 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 GUCD1Q96NT3 240 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 NKX2-4Q9H2Z4 354 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 SEMA6BQ9H3T3 888 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 KCNMB3Q9NPA1 279 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 TCEAL9Q9UHQ7 104 aa13.08□□□□□ -0.32
CCDC88C-208ENST00000554165 MYH9P35579 1960 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 KIF28PB7ZC32 967 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 ST18O60284 1047 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 HBP1O60381 514 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 ARHGEF15O94989 841 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 GHRP10912 638 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 ACTN1P12814 892 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 SLC26A2P50443 739 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 WDR5P61964 334 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 MGAT3Q09327 533 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 FAM26DQ5JW98 314 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 CNKSR3Q6P9H4 555 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 MIER3Q7Z3K6 550 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 SMAP1Q8IYB5 467 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 TIFAQ96CG3 184 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 SH2D3AQ9BRG2 576 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 MTIF3Q9H2K0 278 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 CDHR5Q9HBB8 845 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 BRMS1Q9HCU9 246 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 RNF216Q9NWF9 866 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 VAV3Q9UKW4 847 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 CDY2AQ9Y6F7 541 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 GBF1Q92538 1859 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 WDR81Q562E7 1941 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 IGSF9BQ9UPX0 1349 aa13.07□□□□□ -0.32
CCDC88C-208ENST00000554165 PTPRSQ13332 1948 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 STBD1O95210 358 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 C22orf31O95567 290 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 GCFC2P16383 781 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 PRKCEQ02156 737 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 LPIN1Q14693 890 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 GRIN2CQ14957 1233 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 PLEKHG4Q58EX7 1191 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF697Q5TEC3 545 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 FAM117BQ6P1L5 589 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 TAF2Q6P1X5 1199 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 SPRED2Q7Z698 418 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 RPAINQ86UA6 219 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 KIAA0319LQ8IZA0 1049 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 BANK1Q8NDB2 785 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 FBXO18Q8NFZ0 1043 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 PPP1R16BQ96T49 567 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 TMEM60Q9H2L4 133 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 WRAP73Q9P2S5 460 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 PCDHA2Q9Y5H9 948 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 EVPLQ92817 2033 aa13.06□□□□□ -0.32
CCDC88C-208ENST00000554165 SIP14410 1827 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 CAND2O75155 1236 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 PARNO95453 639 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 OATP04181 439 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 CLCN3P51790 818 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 JAK3P52333 1124 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 MRPS6P82932 125 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 HMGN5P82970 282 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 NBR1Q14596 966 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF484Q5JVG2 852 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 HERC6Q8IVU3 1022 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 FAM184AQ8NB25 1140 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 BBXQ8WY36 941 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF668Q96K58 619 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 CDX2Q99626 313 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 ZNF576Q9H609 170 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 AGO3Q9H9G7 860 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 RGL1Q9NZL6 768 aa13.05□□□□□ -0.32
CCDC88C-208ENST00000554165 CHD7Q9P2D1 2997 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms