RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TARBP2Q15633 366 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 DGKDQ16760 1214 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 XKR3Q5GH77 459 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 FAM160B1Q5W0V3 765 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 SWSAP1Q6NVH7 229 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 POTEBQ6S5H4 581 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 KCNK18Q7Z418 384 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 OR6J1Q8NGC5 347 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 AFG1LQ8WV93 481 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 BBXQ8WY36 941 aaPredicted RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 LARP4BQ92615 738 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 RAD54LQ92698 747 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 KCNN1Q92952 543 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 CCDC34Q96HJ3 373 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 FAM167AQ96KS9 214 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 C7orf25Q9BPX7 421 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 TSEN34Q9BSV6 310 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 LRRC27Q9C0I9 530 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 ZNF302Q9NR11 478 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 PDLIM7Q9NR12 457 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 DDX20Q9UHI6 824 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 KIAA1024Q9UPX6 916 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 DNM3Q9UQ16 869 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 EVPLQ92817 2033 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 NOP56O00567 594 aaKnown RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 DYNC1LI2O43237 492 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 HBP1O60381 514 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 ECM2O94769 699 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 F2P00734 622 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 LGALS2P05162 132 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 RARBP10826 455 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 HOXC8P31273 242 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 STAT6P42226 847 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 RARRES1P49788 294 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 PSMC6P62333 389 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 AMPD3Q01432 767 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 CTTNQ14247 550 aaKnown RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 UGCGQ16739 394 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 BRDTQ58F21 947 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 GJC2Q5T442 439 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-211ENST00000552338 C1orf186Q6ZWK4 172 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 ANO5Q75V66 913 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 OTUD6AQ7L8S5 288 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 UIMC1Q96RL1 719 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 TIPINQ9BVW5 301 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 AP5M1Q9H0R1 490 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 CLSTN2Q9H4D0 955 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 ERAP1Q9NZ08 941 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 PKD2L1Q9P0L9 805 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 TMEM63CQ9P1W3 806 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 GABBR1Q9UBS5 961 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 SERTAD1Q9UHV2 236 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 TUBE1Q9UJT0 475 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 SAMM50Q9Y512 469 aa10.7□□□□□ -0.7
LIMA1-211ENST00000552338 COL1A2P08123 1366 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 SYNRGQ9UMZ2 1314 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 TRIP12Q14669 1992 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 FRMD3A2A2Y4 597 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CHMP2AO43633 222 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 KINO60870 393 aaKnown RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 LETM1O95202 739 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 GUCY2CP25092 1073 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 YWHABP31946 246 aaKnown RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 ADAM17P78536 824 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CYP4A11Q02928 519 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CCDC183Q5T5S1 534 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 POTEGQ6S5H5 508 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 SV2BQ7L1I2 683 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 TPH2Q8IWU9 490 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 EXOC8Q8IYI6 725 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CEP57L1Q8IYX8 460 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 PDILTQ8N807 584 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 PCSK9Q8NBP7 692 aaKnown RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 BANK1Q8NDB2 785 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CNNM3Q8NE01 707 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 ATP8B4Q8TF62 1192 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 KAT2BQ92831 832 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 SYAP1Q96A49 352 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 DHX58Q96C10 678 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 PAGE5Q96GU1 130 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CDK5RAP3Q96JB5 506 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 ZNF333Q96JL9 665 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 SEZ6LQ9BYH1 1024 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 CRISPLD2Q9H0B8 497 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 DHX33Q9H6R0 707 aaKnown RBP10.69□□□□□ -0.7
LIMA1-211ENST00000552338 AZI2Q9H6S1 392 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 SPC25Q9HBM1 224 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 NRBP2Q9NSY0 501 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 OGDHLQ9ULD0 1010 aa10.69□□□□□ -0.7
LIMA1-211ENST00000552338 IGKV6-21A0A0C4DH24 114 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 PVALEFA0A1B0GWK0 134 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 MOXD2PA6NHM9 499 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 ZBTB42B2RXF5 422 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 E9PMD0 336 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 H3BRB1 525 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 GTPBP6O43824 516 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 GAS2O43903 313 aaKnown RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 ZEB2O60315 1214 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 CABYRO75952 493 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 OATP04181 439 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms