RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 EPHX2P34913 555 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 ECE1P42892 770 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 CDSNQ15517 529 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 DLK2Q6UY11 383 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 TTLL7Q6ZT98 887 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 C2CD5Q86YS7 1000 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 SYNE4Q8N205 404 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 NAT16Q8N8M0 369 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 ADAMTS17Q8TE56 1095 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 KISS1RQ969F8 398 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-206ENST00000550611 TSPAN17Q96FV3 270 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 SRRTQ9BXP5 876 aaKnown RBP4.87□□□□□ -1.63
LIMA1-206ENST00000550611 C4AP0C0L4 1744 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 PPM1GO15355 546 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-206ENST00000550611 PMLP29590 882 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 KIAA2012Q0VF49 1180 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 PWP1Q13610 501 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 AMOTQ4VCS5 1084 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 PLEKHO1Q53GL0 409 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-206ENST00000550611 SNAP47Q5SQN1 464 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 OVOS1Q6IE37 1185 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 LGI4Q8N135 537 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 FBXO27Q8NI29 283 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 ALG3Q92685 438 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF622Q969S3 477 aaKnown RBP eCLIP4.86□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF512BQ96KM6 892 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-206ENST00000550611 RSRP1Q9BUV0 290 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF747Q9BV97 191 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 SLC12A9Q9BXP2 914 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 PCED1AQ9H1Q7 454 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 RNF19AQ9NV58 838 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 HACL1Q9UJ83 578 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 DBR1Q9UK59 544 aaKnown RBP4.86□□□□□ -1.63
LIMA1-206ENST00000550611 RNF123Q5XPI4 1314 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF541Q9H0D2 1346 aa4.86□□□□□ -1.63
LIMA1-206ENST00000550611 TRIOBPQ9H2D6 2365 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 IQCA1LA6NCM1 817 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 F6X3S4 739 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 GSTM1P09488 218 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 CYP19A1P11511 503 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 MTHFSP49914 203 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 AUHQ13825 339 aaKnown RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 CWF19L2Q2TBE0 894 aaKnown RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF530Q6P9A1 599 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 GLB1LQ6UWU2 654 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 RELL1Q8IUW5 271 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 LINC00482Q8N8I6 264 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 GOLM1Q8NBJ4 401 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 ATG4CQ96DT6 458 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 NOX5Q96PH1 765 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 LRRC3Q9BY71 257 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 MKRN2Q9H000 416 aaKnown RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 NARFQ9UHQ1 456 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 FBXL21Q9UKT6 434 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 PCDHB14Q9Y5E9 798 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 SOS1Q07889 1333 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-206ENST00000550611 ZNF831Q5JPB2 1677 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 TIAM2Q8IVF5 1701 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 ITGB4P16144 1822 aa4.85□□□□□ -1.63
LIMA1-206ENST00000550611 SPTBN5Q9NRC6 3674 aaKnown RBP4.84□□□□□ -1.63
LIMA1-206ENST00000550611 FGF10O15520 208 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-206ENST00000550611 CA12O43570 354 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 SERPINB2P05120 415 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 GLI4P10075 376 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 GARTP22102 1010 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 GBP2P32456 591 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-206ENST00000550611 MFAP1P55081 439 aaKnown RBP4.84□□□□□ -1.63
LIMA1-206ENST00000550611 SLC9A5Q14940 896 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 FAM26FQ5R3K3 315 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 BORAQ6PGQ7 559 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 OLFM4Q6UX06 510 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 NLRC3Q7RTR2 1065 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 FAM124AQ86V42 546 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 DNAJC10Q8IXB1 793 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 TMEM192Q8IY95 271 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 SMARCC2Q8TAQ2 1214 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 CDK5RAP1Q96SZ6 601 aaKnown RBP4.84□□□□□ -1.63
LIMA1-206ENST00000550611 EHMT1Q9H9B1 1298 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 RNF186Q9NXI6 227 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 ST6GALNAC2Q9UJ37 374 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 INVSQ9Y283 1065 aa4.84□□□□□ -1.63
LIMA1-206ENST00000550611 LTBP3Q9NS15 1303 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 H0YIN7 160 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 CELF2O95319 508 aaKnown RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 CTSHP09668 335 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 EPS15P42566 896 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 EIF5P55010 431 aaKnown RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 FAM160A1Q05DH4 1040 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 CACNB2Q08289 660 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 CWF19L1Q69YN2 538 aaKnown RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 CTU1Q7Z7A3 348 aaKnown RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 ZBTB8AQ96BR9 441 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 BRIP1Q9BX63 1249 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 VPS11Q9H270 941 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 ZNF408Q9H9D4 720 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 SLC52A2Q9HAB3 445 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 KCNQ5Q9NR82 932 aa4.83□□□□□ -1.64
LIMA1-206ENST00000550611 ZNF277Q9NRM2 450 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-206ENST00000550611 MYH14Q7Z406 1995 aaKnown RBP4.82□□□□□ -1.64
LIMA1-206ENST00000550611 CARMIL3Q8ND23 1372 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms