RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 RWDD3Q9Y3V2 267 aa13.26□□□□□ -0.29
SMARCD1-208ENST00000550280 TRPV2Q9Y5S1 764 aa13.26□□□□□ -0.29
SMARCD1-208ENST00000550280 NFASCO94856 1347 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 IGKV6D-21A0A0A0MT36 114 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 CCDC69A6NI79 296 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 RRN3P2A6NIE6 340 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 ATG7O95352 703 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 IRX6P78412 446 aaPredicted RBP13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 RBM10P98175 930 aaKnown RBP13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 SMAD4Q13485 552 aaKnown RBP13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 TMEM266Q2M3C6 531 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 CREB3L3Q68CJ9 461 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 NFXL1Q6ZNB6 911 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 HEATR3Q7Z4Q2 680 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 RSPH3Q86UC2 560 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 SGMS1Q86VZ5 419 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 MICU3Q86XE3 530 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 NPAS4Q8IUM7 802 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 CMTR2Q8IYT2 770 aaKnown RBP13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 KLHL23Q8NBE8 558 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 UIMC1Q96RL1 719 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 PLVAPQ9BX97 442 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 PCDHA2Q9Y5H9 948 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 SQORQ9Y6N5 450 aa13.25□□□□□ -0.29
SMARCD1-208ENST00000550280 ZNF318Q5VUA4 2279 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 KDM3AQ9Y4C1 1321 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 SPDYE3A6NKU9 549 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 ZBTB42B2RXF5 422 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 MAFGO15525 162 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 NCK2O43639 380 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 EYA4O95677 639 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 ATP4AP20648 1035 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 CLK2P49760 499 aaKnown RBP13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 NHLH1Q02575 133 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 HERC4Q5GLZ8 1057 aaPredicted RBP13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 MTHFD1LQ6UB35 978 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 PLPPR4Q7Z2D5 763 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 SKAP1Q86WV1 359 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 RNF135Q8IUD6 432 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 TMTC2Q8N394 836 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 VN1R2Q8NFZ6 395 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 TCEANC2Q96MN5 208 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 ESYT1Q9BSJ8 1104 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 CELF4Q9BZC1 486 aaKnown RBP13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 AGO4Q9HCK5 861 aaKnown RBP13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 ERVK-5Q9HDB9 667 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 FAM217BQ9NTX9 383 aaPredicted RBP13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 TMEM260Q9NX78 707 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 CD207Q9UJ71 328 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 BRPF3Q9ULD4 1205 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 TRPC6Q9Y210 931 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 TECTAO75443 2155 aa13.24□□□□□ -0.29
SMARCD1-208ENST00000550280 SMIM35A0A1B0GVV1 85 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 STXBP3O00186 592 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 MEIS1O00470 390 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 DHX15O43143 795 aaKnown RBP13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 CALM1P0DP23 149 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 CALM2P0DP24 149 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 CALM3P0DP25 149 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 SCG2P13521 617 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 STAT5BP51692 787 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 IER5Q5VY09 327 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 APOA5Q6Q788 366 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 CCDC60Q8IWA6 550 aaPredicted RBP13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 KIAA0319LQ8IZA0 1049 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 SMRP1Q8NCR6 262 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 POF1BQ8WVV4 589 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 CRYGNQ8WXF5 182 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 ANO3Q9BYT9 981 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 RIC8AQ9NPQ8 531 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 BARX2Q9UMQ3 279 aaPredicted RBP13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 FAM50BQ9Y247 325 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 NOC2LQ9Y3T9 749 aaKnown RBP13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 SLC12A7Q9Y666 1083 aa13.23□□□□□ -0.29
SMARCD1-208ENST00000550280 KAT6AQ92794 2004 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 IGLV3-22A0A075B6J6 115 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 FAM86B1E9PN63 330 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 FAM86B2P0C5J1 330 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 SREBF1P36956 1147 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 NRIP1P48552 1158 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 EXOSC10Q01780 885 aaKnown RBP13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 PAK2Q13177 524 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 CEP55Q53EZ4 464 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 ABHD15Q6UXT9 468 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 RBM23Q86U06 439 aaKnown RBP13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 EFHBQ8N7U6 833 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 FTHL17Q9BXU8 183 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 PLXNA4Q9HCM2 1894 aa13.22□□□□□ -0.29
SMARCD1-208ENST00000550280 LOC730098B7Z3J9 87 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 C9IYK1 514 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 DDX39AO00148 427 aaKnown RBP13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 KLRC1P26715 233 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 CDC27P30260 824 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 SARSP49591 514 aaKnown RBP13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 NDUFV1P49821 464 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 MRE11P49959 708 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 KRT76Q01546 638 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 COASYQ13057 564 aa13.21□□□□□ -0.29
SMARCD1-208ENST00000550280 CSPP1Q1MSJ5 1256 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms