RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TRIM37O94972 964 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 XRCC5P13010 732 aaKnown RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 ERVK-9P63128 1117 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 ZNF211Q13398 564 aaPredicted RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 MEI1Q5TIA1 1274 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 AADACL2Q6P093 401 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 FAM163AQ96GL9 167 aaPredicted RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 GCNT4Q9P109 453 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 COL5A3P25940 1745 aaPredicted RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 GRIN2DO15399 1336 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 F5H6K3 240 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 NDUFAB1O14561 156 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 BBOX1O75936 387 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 HLA-DOAP06340 250 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 KLRC3Q07444 240 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 CCDC174Q6PII3 467 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 SIAH1Q8IUQ4 282 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 GLYCTKQ8IVS8 523 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 MSL3Q8N5Y2 521 aaKnown RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 NT5C3AQ9H0P0 336 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 PPANQ9NQ55 473 aaKnown RBP16.47■□□□□ 0.23
USP28-214ENST00000545540 FAM169AQ9Y6X4 670 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 TISP43B9A030 160 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 IBSPP21815 317 aaPredicted RBP16.46■□□□□ 0.23
USP28-214ENST00000545540 PPFIA1Q13136 1202 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 FBXW10Q5XX13 1052 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 PIK3R5Q8WYR1 880 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 INPP4AQ96PE3 977 aaPredicted RBP16.46■□□□□ 0.23
USP28-214ENST00000545540 PLAAQ9Y263 795 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 ATF5Q9Y2D1 282 aaPredicted RBP16.46■□□□□ 0.23
USP28-214ENST00000545540 COBLL1Q53SF7 1204 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 SH3BP5LQ7L8J4 393 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 DAAM2Q86T65 1068 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 PROM2Q8N271 834 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 METTL13Q8N6R0 699 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 UHMK1Q8TAS1 419 aaKnown RBP16.46■□□□□ 0.23
USP28-214ENST00000545540 NAGPAQ9UK23 515 aa16.46■□□□□ 0.23
USP28-214ENST00000545540 SPDYE3A6NKU9 549 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 PRLRP16471 622 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 CRKP46108 304 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 KNOP1Q1ED39 458 aaKnown RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 MYCT1Q8N699 235 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 TEKT1Q969V4 418 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 TDRD3Q9H7E2 651 aaKnown RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 KCNMB3Q9NPA1 279 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 EBAG9O00559 213 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 MSH4O15457 936 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 DAPK3O43293 454 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 TMOD1P28289 359 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 SMARCA1P28370 1054 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 ECE1P42892 770 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 ICA1Q05084 483 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 GPATCH4Q5T3I0 446 aaKnown RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 PALB2Q86YC2 1186 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 SMIM23A6NLE4 172 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 GH2P01242 217 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 AFPP02771 609 aaKnown RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 NR3C1P04150 777 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 NOVP48745 357 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 EMBQ6PCB8 327 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 DHX37Q8IY37 1157 aaKnown RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 USP38Q8NB14 1042 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 UBLCP1Q8WVY7 318 aaPredicted RBP16.45■□□□□ 0.22
USP28-214ENST00000545540 LRRC27Q9C0I9 530 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 ACP6Q9NPH0 428 aa16.45■□□□□ 0.22
USP28-214ENST00000545540 SBF2Q86WG5 1849 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 TMEM110-MUSTN1A8MSY1 372 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 DCDC2CA8MYV0 355 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 EIF3HO15372 352 aaKnown RBP eCLIP16.44■□□□□ 0.22
USP28-214ENST00000545540 OPA1O60313 960 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 CORO7P57737 925 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 SPIRE1Q08AE8 756 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 RRP1BQ14684 758 aaKnown RBP16.44■□□□□ 0.22
USP28-214ENST00000545540 TAS2R14Q9NYV8 317 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 ZBTB21Q9ULJ3 1066 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 TTI1O43156 1089 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 SART1O43290 800 aaKnown RBP16.44■□□□□ 0.22
USP28-214ENST00000545540 ATP2C2O75185 946 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 PEX26Q7Z412 305 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 RNF10Q8N5U6 811 aaKnown RBP16.44■□□□□ 0.22
USP28-214ENST00000545540 BANK1Q8NDB2 785 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 TRIM51Q9BSJ1 452 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 PCIF1Q9H4Z3 704 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 RREB1Q92766 1687 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 KRIT1O00522 736 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 RPS6KA5O75582 802 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 NDUFB10O96000 172 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 ETNPPLQ8TBG4 499 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 CEP63Q96MT8 703 aa16.44■□□□□ 0.22
USP28-214ENST00000545540 KIF4AO95239 1232 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 TTC31Q49AM3 519 aaPredicted RBP16.43■□□□□ 0.22
USP28-214ENST00000545540 IQCKQ8N0W5 287 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 LENG9Q96B70 501 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 GDF3Q9NR23 364 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 A0A1W2PRG0 241 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 POLRMTO00411 1230 aaKnown RBP16.43■□□□□ 0.22
USP28-214ENST00000545540 DDX3XO00571 662 aaKnown RBP eCLIP16.43■□□□□ 0.221e-9■■■■□ 20
USP28-214ENST00000545540 TBCAO75347 108 aaKnown RBP16.43■□□□□ 0.22
USP28-214ENST00000545540 USP8P40818 1118 aa16.43■□□□□ 0.22
USP28-214ENST00000545540 MAGEA9P43362 315 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms