RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 PROM2Q8N271 834 aa14.84□□□□□ -0.03
PTPN1-202ENST00000541713 NT5C3AQ9H0P0 336 aa14.84□□□□□ -0.03
PTPN1-202ENST00000541713 FAM184BQ9ULE4 1060 aa14.84□□□□□ -0.03
PTPN1-202ENST00000541713 GAKO14976 1311 aa14.84□□□□□ -0.03
PTPN1-202ENST00000541713 ECE2O60344 883 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 SERPING1P05155 500 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 UCHL3P15374 230 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 CRY2Q49AN0 593 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 CERS3Q8IU89 383 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 MICALL1Q8N3F8 863 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 UBLCP1Q8WVY7 318 aaPredicted RBP14.83□□□□□ -0.03
PTPN1-202ENST00000541713 ZIM3Q96PE6 472 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 PURBQ96QR8 312 aaKnown RBP14.83□□□□□ -0.03
PTPN1-202ENST00000541713 EIF2AK1Q9BQI3 630 aaKnown RBP14.83□□□□□ -0.03
PTPN1-202ENST00000541713 AMACRQ9UHK6 382 aa14.83□□□□□ -0.03
PTPN1-202ENST00000541713 RAD51CO43502 376 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 NR3C1P04150 777 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 TCP1P17987 556 aaKnown RBP14.83□□□□□ -0.04
PTPN1-202ENST00000541713 SEC24CP53992 1094 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 CEP85LQ5SZL2 805 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 SIAH1Q8IUQ4 282 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.83□□□□□ -0.041e-6■■■■■ 27.9
PTPN1-202ENST00000541713 FEZ2Q9UHY8 353 aaPredicted RBP14.83□□□□□ -0.04
PTPN1-202ENST00000541713 BMP3P12645 472 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 KIAA1755Q5JYT7 1200 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 LRCH2Q5VUJ6 765 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 SP8Q8IXZ3 490 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 PPANQ9NQ55 473 aaKnown RBP14.83□□□□□ -0.04
PTPN1-202ENST00000541713 CEP72Q9P209 647 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 PI4KBQ9UBF8 816 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 FZD1Q9UP38 647 aa14.83□□□□□ -0.04
PTPN1-202ENST00000541713 CASZ1Q86V15 1759 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ROBO3Q96MS0 1386 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ODR4Q5SWX8 454 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 SYDE2Q5VT97 1194 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 PEX26Q7Z412 305 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 TRIM59Q8IWR1 403 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ERMNQ8TAM6 284 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 RBM46Q8TBY0 533 aaKnown RBP14.82□□□□□ -0.04
PTPN1-202ENST00000541713 CCDC127Q96BQ5 260 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 SMCHD1A6NHR9 2005 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 GRID2IPA4D2P6 1211 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ATMINO43313 823 aaPredicted RBP14.82□□□□□ -0.04
PTPN1-202ENST00000541713 SPATA31C1P0DKV0 1188 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 KNOP1Q1ED39 458 aaKnown RBP14.82□□□□□ -0.04
PTPN1-202ENST00000541713 PPP4R3AQ6IN85 833 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 PPP1R18Q6NYC8 613 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ZSWIM2Q8NEG5 633 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 TMOD4Q9NZQ9 345 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ABCB11O95342 1321 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 AFPP02771 609 aaKnown RBP14.82□□□□□ -0.04
PTPN1-202ENST00000541713 NNTQ13423 1086 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 C2CD6Q53TS8 623 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 CASKIN2Q8WXE0 1202 aa14.82□□□□□ -0.04
PTPN1-202ENST00000541713 ESYT2A0FGR8 921 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 KRIT1O00522 736 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 HGSO14964 777 aaPredicted RBP14.81□□□□□ -0.04
PTPN1-202ENST00000541713 EXOC3O60645 756 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 GAS7O60861 476 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 RNF187Q5TA31 235 aaPredicted RBP14.81□□□□□ -0.04
PTPN1-202ENST00000541713 PRR12Q9ULL5 1215 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 ANO9A1A5B4 782 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 PPIP5K2O43314 1243 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 ARP10275 920 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 EPB41P11171 864 aaKnown RBP14.81□□□□□ -0.04
PTPN1-202ENST00000541713 MYCLP12524 364 aaPredicted RBP14.81□□□□□ -0.04
PTPN1-202ENST00000541713 PON1P27169 355 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 HSPA1LP34931 641 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 HOXD13P35453 343 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 SLC18A3Q16572 532 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 PALB2Q86YC2 1186 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 CAPS2Q9BXY5 557 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 LRRC27Q9C0I9 530 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 MED4Q9NPJ6 270 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 NHSL1Q5SYE7 1610 aa14.81□□□□□ -0.04
PTPN1-202ENST00000541713 TNRC6CQ9HCJ0 1690 aaKnown RBP14.81□□□□□ -0.04
PTPN1-202ENST00000541713 KRT13P13646 458 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 SLC12A3P55017 1021 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 SOX10P56693 466 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 TRIM51Q9BSJ1 452 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 CCDC113Q9H0I3 377 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 KCTD10Q9H3F6 313 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 TAS2R14Q9NYV8 317 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 NR2E1Q9Y466 385 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 A0A1W2PQJ5 194 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 DHX9Q08211 1270 aaKnown RBP14.8□□□□□ -0.04
PTPN1-202ENST00000541713 FAM178BQ8IXR5 827 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 FAM186BQ8IYM0 893 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 PDGFDQ9GZP0 370 aaPredicted RBP14.8□□□□□ -0.04
PTPN1-202ENST00000541713 TMEM39BQ9GZU3 492 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 RASSF4Q9H2L5 321 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 LUC7LQ9NQ29 371 aaKnown RBP14.8□□□□□ -0.04
PTPN1-202ENST00000541713 DAPK3O43293 454 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 SNHG28P0DPA3 235 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 MCM3P25205 808 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 FLT3P36888 993 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 ZCWPW2Q504Y3 356 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 EPC2Q52LR7 807 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 TTMPQ5BVD1 217 aa14.8□□□□□ -0.04
PTPN1-202ENST00000541713 SRLQ86TD4 932 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms