RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 FAM26FQ5R3K3 315 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 MCTP2Q6DN12 878 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 CCDC63Q8NA47 563 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 ZNF341Q9BYN7 854 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 TSKSQ9UJT2 592 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 LACTBP83111 547 aaPredicted RBP10.9□□□□□ -0.66
TRAF1-202ENST00000540010 ARHGAP4P98171 946 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 AP3B2Q13367 1082 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 ZNF365Q70YC5 407 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 TPH2Q8IWU9 490 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 PPP1R12CQ9BZL4 782 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 STK38LQ9Y2H1 464 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 ATRNL1Q5VV63 1379 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 A0A1B0GUA9 196 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 IFNAR2P48551 515 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 CYP2J2P51589 502 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 JAG1P78504 1218 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 CDAN1Q8IWY9 1227 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 CPXCR1Q8N123 301 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 MTRQ99707 1265 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 STK17AQ9UEE5 414 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 AMFRQ9UKV5 643 aa10.9□□□□□ -0.66
TRAF1-202ENST00000540010 RGS16O15492 202 aaPredicted RBP10.9□□□□□ -0.67
TRAF1-202ENST00000540010 RRP1BQ14684 758 aaKnown RBP10.9□□□□□ -0.67
TRAF1-202ENST00000540010 SIAH1Q8IUQ4 282 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 MICALL2Q8IY33 904 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 P2RX5Q93086 422 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 PANX2Q96RD6 677 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 IMPG2Q9BZV3 1241 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 USTQ9Y2C2 406 aa10.9□□□□□ -0.67
TRAF1-202ENST00000540010 FXR2P51116 673 aaKnown RBP eCLIP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 NAALADL2Q58DX5 795 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 SAMD7Q7Z3H4 446 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 SLFN12Q8IYM2 578 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 GMLQ99445 158 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 TRIM9Q9C026 710 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 NHEJ1Q9H9Q4 299 aaPredicted RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 HDAC6Q9UBN7 1215 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 TNS1Q9HBL0 1735 aaKnown RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 GOLGA8KD6RF30 607 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 CALUO43852 315 aaPredicted RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 CLTAP09496 248 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 EEF1GP26641 437 aaKnown RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 EIF4A3P38919 411 aaKnown RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 GMPSP49915 693 aaPredicted RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 UBXN2AP68543 259 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 FAM83AQ86UY5 434 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 CACNA2D3Q8IZS8 1091 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 UBL4BQ8N7F7 174 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 NT5C3AQ9H0P0 336 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 HSD3B7Q9H2F3 369 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 KIAA1024Q9UPX6 916 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 TMX2Q9Y320 296 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 ADAMTSL1Q8N6G6 1762 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 ARHGEF35A5YM69 484 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 H2AFZP0C0S5 128 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 POLR2MP0CAP2 368 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 CAP2P40123 477 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 USP11P51784 963 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 PDIA5Q14554 519 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 DENND2CQ68D51 928 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 H2AFVQ71UI9 128 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 CCDC125Q86Z20 511 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 VCPKMTQ9H867 229 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 PANK4Q9NVE7 773 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 KBTBD4Q9NVX7 518 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 MRPL11Q9Y3B7 192 aaKnown RBP10.89□□□□□ -0.67
TRAF1-202ENST00000540010 ADGRG1Q9Y653 693 aa10.89□□□□□ -0.67
TRAF1-202ENST00000540010 KDM3AQ9Y4C1 1321 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 MTMR9Q96QG7 549 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 NUCKS1Q9H1E3 243 aaKnown RBP10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CNOT7Q9UIV1 285 aaKnown RBP10.88□□□□□ -0.67
TRAF1-202ENST00000540010 SCN9AQ15858 1988 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 BACH1O14867 736 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 PCK1P35558 622 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 KCNB1Q14721 858 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 TCP11X2Q5H9J9 407 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CCDC170Q8IYT3 715 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ADAMTS1Q9UHI8 967 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CCDC160A6NGH7 325 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ZNF18P17022 549 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ADCY1Q08828 1119 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 E2F5Q15329 346 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 FKBP1CQ5VVH2 108 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ARHGAP27Q6ZUM4 889 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 FAM160B2Q86V87 743 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ANKRD7Q92527 254 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 MTMR8Q96EF0 704 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 MYH8P13535 1937 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 DCAF8L1A6NGE4 600 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 ALDH3A1P30838 453 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 STAT3P40763 770 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 GRB10Q13322 594 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 GKAP1Q5VSY0 366 aaPredicted RBP10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CAPN12Q6ZSI9 719 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 FBXO28Q9NVF7 368 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CCPG1Q9ULG6 757 aa10.88□□□□□ -0.67
TRAF1-202ENST00000540010 CDK5RAP2Q96SN8 1893 aa10.87□□□□□ -0.67
TRAF1-202ENST00000540010 KRT15P19012 456 aa10.87□□□□□ -0.67
TRAF1-202ENST00000540010 ZBED6P86452 979 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms