RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CALR3Q96L12 384 aaKnown RBP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SWAP70Q9UH65 585 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 TMEM59LQ9UK28 342 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 PNMA2Q9UL42 364 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 NFS1Q9Y697 457 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 COL4A1P02462 1669 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 ESYT2A0FGR8 921 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 MYBP10242 640 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SCTRP47872 440 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 MRPL12P52815 198 aaKnown RBP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 AGBL2Q5U5Z8 902 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 GJB7Q6PEY0 223 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 PAXIP1Q6ZW49 1069 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SLC51AQ86UW1 340 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 TBC1D31Q96DN5 1066 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 FAM114A2Q9NRY5 505 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SRP68Q9UHB9 627 aaKnown RBP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 GGA2Q9UJY4 613 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 KDM3AQ9Y4C1 1321 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 PABPC4Q13310 644 aaKnown RBP eCLIP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 HIBCHQ6NVY1 386 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-237ENST00000539504 IRF2BP2Q7Z5L9 587 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 TMC3Q7Z5M5 1100 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SYCE1Q8N0S2 351 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 SGSM3Q96HU1 749 aa12.26□□□□□ -0.45
SYNE1-237ENST00000539504 POTEFA5A3E0 1075 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 SPDYE3A6NKU9 549 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CLIC2O15247 247 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 VIMP08670 466 aaKnown RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 POTEIP0CG38 1075 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 NT5C2P49902 561 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 PLTPP55058 493 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 POTEGQ6S5H5 508 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 POTEEQ6S8J3 1075 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 PNMA8AQ86V59 439 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 TAX1BP1Q86VP1 789 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 ANKS4BQ8N8V4 417 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CCDC197Q8NCU1 140 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CUL5Q93034 780 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 GOLGA6L10A0A0M3HER8 536 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 FRMD3A2A2Y4 597 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 RPSAP08865 295 aaKnown RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 ZNF211Q13398 564 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 HOOK3Q86VS8 718 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CCDC50Q8IVM0 306 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 HAS1Q92839 578 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 NYXQ9GZU5 481 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 SLITRK6Q9H5Y7 841 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 VEZTQ9HBM0 779 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 SRRM3A6NNA2 597 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 F8VZ95 297 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 MPHOSPH10O00566 681 aaKnown RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 OPLAHO14841 1288 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 KCNQ2O43526 872 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CAND2O75155 1236 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 GBP2P32456 591 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 ELF1P32519 619 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 TPTE2Q6XPS3 522 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 C16orf86Q6ZW13 317 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 LRRC57Q8N9N7 239 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CHMP6Q96FZ7 201 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 PSTPIP2Q9H939 334 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 GCNT4Q9P109 453 aa12.25□□□□□ -0.45
SYNE1-237ENST00000539504 TPX2Q9ULW0 747 aaKnown RBP12.25□□□□□ -0.45
SYNE1-237ENST00000539504 CES2O00748 559 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CYP11B2P19099 503 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 PON1P27169 355 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 IFNAR2P48551 515 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 TTBK2Q6IQ55 1244 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 ZNF804AQ7Z570 1209 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 TCP11Q8WWU5 503 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 TATDN2Q93075 761 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 XPO6Q96QU8 1125 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 RAB17Q9H0T7 212 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 RIOX1Q9H6W3 641 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SUFUQ9UMX1 484 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SNX24Q9Y343 169 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 ECM2O94769 699 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 MMEP08473 750 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CASP5P51878 434 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 PREPLQ4J6C6 727 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 DENND2CQ68D51 928 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 DPP8Q6V1X1 898 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 ARMC9Q7Z3E5 817 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SFR1Q86XK3 245 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 EIF1ADQ8N9N8 165 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 KCTD10Q9H3F6 313 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 OSGEPQ9NPF4 335 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 A1CFQ9NQ94 594 aaKnown RBP12.24□□□□□ -0.45
SYNE1-237ENST00000539504 DAAM1Q9Y4D1 1078 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 SHANK3Q9BYB0 1731 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L15C9J2P7 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L13C9JLJ4 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L11C9JVI0 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L18D6R9N7 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L22D6RA61 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L17D6RBQ6 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L19D6RCP7 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 USP17L20D6RJB6 530 aa12.24□□□□□ -0.45
SYNE1-237ENST00000539504 CLTAP09496 248 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms