RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ESYT3	A0FGR9	886 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296		M0R2C6	588 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	KCNK3	O14649	394 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	PRRG2	O14669	202 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	MAFG	O15525	162 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	GAS7	O60861	476 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	KRT37	O76014	449 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	C4BPA	P04003	597 aa	Known RBP	4.06	□□□□□ -1.76
CD44-238	ENST00000534296	POLD1	P28340	1107 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	SDHA	P31040	664 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	PABPC4	Q13310	644 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
CD44-238	ENST00000534296	USP10	Q14694	798 aa	Known RBP	4.06	□□□□□ -1.76
CD44-238	ENST00000534296	TMEM132B	Q14DG7	1078 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	CFAP100	Q494V2	611 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	PHF19	Q5T6S3	580 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	NOP9	Q86U38	636 aa	Known RBP	4.06	□□□□□ -1.76
CD44-238	ENST00000534296	NOSTRIN	Q8IVI9	506 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	WNK4	Q96J92	1243 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	FEZ1	Q99689	392 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	CARD11	Q9BXL7	1154 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	ACSS2	Q9NR19	701 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	FANCL	Q9NW38	375 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	ADAM29	Q9UKF5	820 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	PLAA	Q9Y263	795 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	ZKSCAN5	Q9Y2L8	839 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	TNPO3	Q9Y5L0	923 aa	Known RBP	4.06	□□□□□ -1.76
CD44-238	ENST00000534296	B3GALT1	Q9Y5Z6	326 aa		4.06	□□□□□ -1.76
CD44-238	ENST00000534296	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	NPEPPSL1	A6NEC2	478 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	PPP1R12A	O14974	1030 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	PRICKLE3	O43900	615 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	HMGCR	P04035	888 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	MME	P08473	750 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	JMJD7	P0C870	316 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	FNTB	P49356	437 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	MEOX1	P50221	254 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	NEK4	P51957	841 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	SART3	Q15020	963 aa	Known RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	SPATS1	Q496A3	300 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	ZMAT1	Q5H9K5	638 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	PIK3R6	Q5UE93	754 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	NME9	Q86XW9	330 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	CHST13	Q8NET6	341 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	NUDT10	Q8NFP7	164 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	NUDT11	Q96G61	164 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	AJUBA	Q96IF1	538 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	SCYL1	Q96KG9	808 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	RNPC3	Q96LT9	517 aa	Known RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	GBP4	Q96PP9	640 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	BTBD2	Q9BX70	525 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	SLK	Q9H2G2	1235 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-238	ENST00000534296	PIF1	Q9H611	641 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	UCKL1	Q9NWZ5	548 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	WASF3	Q9UPY6	502 aa		4.05	□□□□□ -1.76
CD44-238	ENST00000534296	PTPDC1	A2A3K4	754 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	B4GALT3	O60512	393 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	B4GALT4	O60513	344 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	DNAJC8	O75937	253 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	GLRX3	O76003	335 aa	Known RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	KLHL18	O94889	574 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	IL18BP	O95998	194 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	CYP17A1	P05093	508 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	COL6A1	P12109	1028 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	APEX1	P27695	318 aa	Known RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ECE1	P42892	770 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ETV4	P43268	484 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	KIF11	P52732	1056 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PPP2CB	P62714	309 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PPP2CA	P67775	309 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ROM1	Q03395	351 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	SLFN13	Q68D06	897 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ABHD17C	Q6PCB6	329 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	OTOP1	Q7RTM1	612 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	CIR1	Q86X95	450 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PASD1	Q8IV76	773 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	RTKN2	Q8IZC4	609 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	AHI1	Q8N157	1196 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PPM1K	Q8N3J5	372 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ASB15	Q8WXK1	588 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	ERCC4	Q92889	916 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	NINJ1	Q92982	152 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	LOXL4	Q96JB6	756 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	OR10A5	Q9H207	317 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	TMA7	Q9Y2S6	64 aa	Known RBP	4.04	□□□□□ -1.76
CD44-238	ENST00000534296	CD2AP	Q9Y5K6	639 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	DUSP10	Q9Y6W6	482 aa		4.04	□□□□□ -1.76
CD44-238	ENST00000534296	PRAMEF22	A3QJZ6	481 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	CLSTN1	O94985	981 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	ITGB3	P05106	788 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	MC4R	P32245	332 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	EPHB4	P54760	987 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	IL13RA1	P78552	427 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	OCRL	Q01968	901 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	ZNF460	Q14592	562 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.03	□□□□□ -1.76
CD44-238	ENST00000534296	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.03	□□□□□ -1.76
CD44-238	ENST00000534296	GRAMD4	Q6IC98	578 aa		4.03	□□□□□ -1.76
CD44-238	ENST00000534296	KIF18B	Q86Y91	864 aa		4.03	□□□□□ -1.76

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