RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CHGBP05060 677 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 ADCYAP1R1P41586 468 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 JAG1P78504 1218 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 PFKPQ01813 784 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 DLX2Q07687 328 aaPredicted RBP5.38□□□□□ -1.55
CD44-233ENST00000531141 SMAD4Q13485 552 aaKnown RBP5.38□□□□□ -1.55
CD44-233ENST00000531141 EPHA7Q15375 998 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 TCERG1LQ5VWI1 586 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 NME9Q86XW9 330 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 PASD1Q8IV76 773 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 LRRC56Q8IYG6 542 aaPredicted RBP5.38□□□□□ -1.55
CD44-233ENST00000531141 ZZZ3Q8IYH5 903 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 NXPE1Q8N323 547 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 HIPK4Q8NE63 616 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 CHTF18Q8WVB6 975 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 GBP4Q96PP9 640 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 TTC1Q99614 292 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 SYT3Q9BQG1 590 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 IFT22Q9H7X7 185 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 ARHGAP20Q9P2F6 1191 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 WASF3Q9UPY6 502 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 SHROOM4Q9ULL8 1493 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 ANKRD62A6NC57 917 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 ZEB2O60315 1214 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 BRINP1O60477 761 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 FKBP9O95302 570 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 MPIG6BO95866 241 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 RPL13P26373 211 aaKnown RBP5.37□□□□□ -1.55
CD44-233ENST00000531141 MC4RP32245 332 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 STRN3Q13033 797 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 TTLL7Q6ZT98 887 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 FKBP9P1Q75LS8 142 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 UBR7Q8N806 425 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 LINC01356Q8N9X3 169 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 ZSCAN18Q8TBC5 510 aaPredicted RBP5.37□□□□□ -1.55
CD44-233ENST00000531141 ZCRB1Q8TBF4 217 aaKnown RBP5.37□□□□□ -1.55
CD44-233ENST00000531141 GPR101Q96P66 508 aaPredicted RBP5.37□□□□□ -1.55
CD44-233ENST00000531141 ELF4Q99607 663 aaPredicted RBP5.37□□□□□ -1.55
CD44-233ENST00000531141 FOXB1Q99853 325 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 SLC39A2Q9NP94 309 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 INCENPQ9NQS7 918 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 ZFP69BQ9UJL9 534 aa5.37□□□□□ -1.55
CD44-233ENST00000531141 FBXO21O94952 628 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 ZNF28P17035 718 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 SLC9A1P19634 815 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 PHC1P78364 1004 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 PRR31Q5SQ13 230 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 GPR158Q5T848 1215 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 ESRP1Q6NXG1 681 aaKnown RBP5.36□□□□□ -1.55
CD44-233ENST00000531141 RTN4RL1Q86UN2 441 aaPredicted RBP5.36□□□□□ -1.55
CD44-233ENST00000531141 C1QL4Q86Z23 238 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 CALML6Q8TD86 181 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 C16orf92Q96LL3 132 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 IRF2BPLQ9H1B7 796 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 EMC7Q9NPA0 242 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 TOMM22Q9NS69 142 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 KCND1Q9NSA2 647 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 SPATA6Q9NWH7 488 aaPredicted RBP5.36□□□□□ -1.55
CD44-233ENST00000531141 GALNT8Q9NY28 637 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 H2AFY2Q9P0M6 372 aaPredicted RBP5.36□□□□□ -1.55
CD44-233ENST00000531141 MCM8Q9UJA3 840 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 CROTQ9UKG9 612 aa5.36□□□□□ -1.55
CD44-233ENST00000531141 UBA6A0AVT1 1052 aaPredicted RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 NEMP1O14524 444 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 FFAR3O14843 346 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 MAFO75444 373 aaPredicted RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 CD40P25942 277 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 PTX3P26022 381 aaPredicted RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 GLRBP48167 497 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 NFKB2Q00653 900 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 ALDH6A1Q02252 535 aaKnown RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 ROM1Q03395 351 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 ADCY1Q08828 1119 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 RTP5Q14D33 572 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 SMAD2Q15796 467 aaKnown RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 ATP13A4Q4VNC1 1196 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 PRAMEF18Q5VWM3 479 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 DPP8Q6V1X1 898 aaPredicted RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 STRA8Q7Z7C7 330 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 STK32CQ86UX6 486 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 C7orf31Q8N865 590 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 FOXRED1Q96CU9 486 aaPredicted RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 BTBD2Q9BX70 525 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 BRINP2Q9C0B6 783 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 ZMAT4Q9H898 229 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 SPTLC3Q9NUV7 552 aa5.35□□□□□ -1.55
CD44-233ENST00000531141 USP36Q9P275 1121 aaKnown RBP5.35□□□□□ -1.55
CD44-233ENST00000531141 PRAMEF22A3QJZ6 481 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 GOLGA6L22H0YM25 854 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 TGM5O43548 720 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 ULK1O75385 1050 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 PRLP01236 227 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 COL6A1P12109 1028 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 NCLP19338 710 aaKnown RBP5.34□□□□□ -1.55
CD44-233ENST00000531141 CFPP27918 469 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 LSP1P33241 339 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 ECE1P42892 770 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 LRRC32Q14392 662 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 STAT4Q14765 748 aa5.34□□□□□ -1.55
CD44-233ENST00000531141 DDB1Q16531 1140 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms