RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 ZBTB10Q96DT7 871 aa13.84□□□□□ -0.19
USH1C-208ENST00000529563 ANO3Q9BYT9 981 aa13.84□□□□□ -0.19
USH1C-208ENST00000529563 UPF3BQ9BZI7 483 aaKnown RBP13.84□□□□□ -0.19
USH1C-208ENST00000529563 ALG13Q9NP73 1137 aaKnown RBP13.84□□□□□ -0.19
USH1C-208ENST00000529563 RIC8AQ9NPQ8 531 aa13.84□□□□□ -0.19
USH1C-208ENST00000529563 V9GY48 417 aaPredicted RBP13.84□□□□□ -0.19
USH1C-208ENST00000529563 NFASCO94856 1347 aa13.84□□□□□ -0.19
USH1C-208ENST00000529563 RALGAPA2Q2PPJ7 1873 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 COL4A6Q14031 1691 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 C5orf67F2Z3F1 127 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 hCG_1984214I3L0E3 225 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 DGKIO75912 1065 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 SCG2P13521 617 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 NDUFV1P49821 464 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 KRT76Q01546 638 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 APOA5Q6Q788 366 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 PLPPR4Q7Z2D5 763 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 NME8Q8N427 588 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 ZNF713Q8N859 430 aaPredicted RBP13.83□□□□□ -0.2
USH1C-208ENST00000529563 CYP2W1Q8TAV3 490 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 TCEANC2Q96MN5 208 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 POP1Q99575 1024 aaKnown RBP13.83□□□□□ -0.2
USH1C-208ENST00000529563 PLVAPQ9BX97 442 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 CELF4Q9BZC1 486 aaKnown RBP13.83□□□□□ -0.2
USH1C-208ENST00000529563 AGO3Q9H9G7 860 aaKnown RBP13.83□□□□□ -0.2
USH1C-208ENST00000529563 RNF216Q9NWF9 866 aaPredicted RBP13.83□□□□□ -0.2
USH1C-208ENST00000529563 PADI3Q9ULW8 664 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 PCDHA2Q9Y5H9 948 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 CNTNAP5Q8WYK1 1306 aa13.83□□□□□ -0.2
USH1C-208ENST00000529563 KLF18A0A0U1RQI7 1052 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 DENND3A2RUS2 1198 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 PRR33A8MZF0 331 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 DCXO43602 365 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 ARP10275 920 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 SLC26A2P50443 739 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 AP3B2Q13367 1082 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 KRT32Q14532 448 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 ODR4Q5SWX8 454 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 MIS18BP1Q6P0N0 1132 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 MTHFD1LQ6UB35 978 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 DHX32Q7L7V1 743 aaKnown RBP13.82□□□□□ -0.2
USH1C-208ENST00000529563 CMTR2Q8IYT2 770 aaKnown RBP13.82□□□□□ -0.2
USH1C-208ENST00000529563 MICAL1Q8TDZ2 1067 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 CLP1Q92989 425 aaKnown RBP13.82□□□□□ -0.2
USH1C-208ENST00000529563 PCYT2Q99447 389 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 AGO4Q9HCK5 861 aaKnown RBP13.82□□□□□ -0.2
USH1C-208ENST00000529563 TMEM260Q9NX78 707 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 PRKAG3Q9UGI9 489 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 PCDHB7Q9Y5E2 793 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 MRPL42Q9Y6G3 142 aaKnown RBP13.82□□□□□ -0.2
USH1C-208ENST00000529563 SQORQ9Y6N5 450 aa13.82□□□□□ -0.2
USH1C-208ENST00000529563 SMIM35A0A1B0GVV1 85 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 PPFIA3O75145 1194 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 RPS6KA5O75582 802 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 MMP1P03956 469 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 AKAP17AQ02040 695 aaKnown RBP13.81□□□□□ -0.2
USH1C-208ENST00000529563 TMEM266Q2M3C6 531 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 JAKMIP3Q5VZ66 844 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 PDXDC2PQ6P474 469 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 TRMT1LQ7Z2T5 733 aaKnown RBP13.81□□□□□ -0.2
USH1C-208ENST00000529563 PLA2G4DQ86XP0 818 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 TEX2Q8IWB9 1127 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 ADHFE1Q8IWW8 467 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 ZNF689Q96CS4 500 aaPredicted RBP13.81□□□□□ -0.2
USH1C-208ENST00000529563 ZNF302Q9NR11 478 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 AAASQ9NRG9 546 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 BARHL2Q9NY43 387 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 CD207Q9UJ71 328 aa13.81□□□□□ -0.2
USH1C-208ENST00000529563 ARIH1Q9Y4X5 557 aaPredicted RBP13.81□□□□□ -0.2
USH1C-208ENST00000529563 CCDC196A0A1B0GTZ2 297 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 STXBP3O00186 592 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 HBP1O60381 514 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 KLRC1P26715 233 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 SREBF1P36956 1147 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 METAP2P50579 478 aaKnown RBP eCLIP13.8□□□□□ -0.2
USH1C-208ENST00000529563 HYAL1Q12794 435 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 ITGB3BPQ13352 177 aaPredicted RBP13.8□□□□□ -0.2
USH1C-208ENST00000529563 COL9A3Q14050 684 aaPredicted RBP13.8□□□□□ -0.2
USH1C-208ENST00000529563 NAALADL2Q58DX5 795 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 CCDC12Q8WUD4 166 aaPredicted RBP13.8□□□□□ -0.2
USH1C-208ENST00000529563 LINC01599Q8WXQ3 324 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 P2RX5Q93086 422 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 PPP1R16BQ96T49 567 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 UPF2Q9HAU5 1272 aaKnown RBP13.8□□□□□ -0.2
USH1C-208ENST00000529563 C11orf16Q9NQ32 467 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 PLAGL2Q9UPG8 496 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 SAMM50Q9Y512 469 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 PCDHB12Q9Y5F1 795 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 IGSF9BQ9UPX0 1349 aa13.8□□□□□ -0.2
USH1C-208ENST00000529563 MEIS1O00470 390 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 HMGB1P09429 215 aaKnown RBP13.79□□□□□ -0.2
USH1C-208ENST00000529563 GTF2F1P35269 517 aaKnown RBP eCLIP13.79□□□□□ -0.2
USH1C-208ENST00000529563 ZP2Q05996 745 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 SMAD4Q13485 552 aaKnown RBP13.79□□□□□ -0.2
USH1C-208ENST00000529563 ZNF484Q5JVG2 852 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 TYW1BQ6NUM6 668 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 SWSAP1Q6NVH7 229 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 NIPA1Q7RTP0 329 aa13.79□□□□□ -0.2
USH1C-208ENST00000529563 RBM23Q86U06 439 aaKnown RBP13.79□□□□□ -0.2
USH1C-208ENST00000529563 METTL13Q8N6R0 699 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms