RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TAB3Q8N5C8 712 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 NECAB1Q8N987 351 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 PRPF38AQ8NAV1 312 aaKnown RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 GALNT6Q8NCL4 622 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ZSWIM2Q8NEG5 633 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 SH3RF3Q8TEJ3 882 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 TMEM40Q8WWA1 233 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 EDARADDQ8WWZ3 215 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 BRF1Q92994 677 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 RTFDC1Q9BY42 306 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 CRNKL1Q9BZJ0 848 aaKnown RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 RBSNQ9H1K0 784 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 IGFLR1Q9H665 355 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 ZNF277Q9NRM2 450 aaPredicted RBP4.84□□□□□ -1.63
CD44-226ENST00000527889 CHMP5Q9NZZ3 219 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 PRR12Q9ULL5 1215 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 TPCN1Q9ULQ1 816 aa4.84□□□□□ -1.63
CD44-226ENST00000527889 SCN4AP35499 1836 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 LTBP3Q9NS15 1303 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 YDJCA8MPS7 323 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 GFRA2O00451 464 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 PRC1O43663 620 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 ADCY3O60266 1144 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 HTR3BO95264 441 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 LDHCP07864 332 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 GSTP1P09211 210 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 ACRP10323 421 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 BTDP43251 543 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 CDKN1CP49918 316 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 SNRPNP63162 240 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 GSTO1P78417 241 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 EXOSC10Q01780 885 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 PPARAQ07869 468 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 KIAA2012Q0VF49 1180 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 PKP1Q13835 747 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 ZYXQ15942 572 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 TMEM67Q5HYA8 995 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 AKNAD1Q5T1N1 836 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 MAP1SQ66K74 1059 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 HGSNATQ68CP4 663 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 EEPD1Q7L9B9 569 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 RALYLQ86SE5 291 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 FERMT3Q86UX7 667 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 MAPKAPK5Q8IW41 473 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 TEX11Q8IYF3 940 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 SMC1BQ8NDV3 1235 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 SUPT20HQ8NEM7 779 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 NCOA7Q8NI08 942 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 MORC4Q8TE76 937 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 TBC1D22AQ8WUA7 517 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 TGFBRAP1Q8WUH2 860 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 JDP2Q8WYK2 163 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 ZSCAN31Q96LW9 406 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 NOL10Q9BSC4 688 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 SPATA9Q9BWV2 254 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 FAM126AQ9BYI3 521 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 NACAP1Q9BZK3 213 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 UBE2OQ9C0C9 1292 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 DCP1AQ9NPI6 582 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 AVENQ9NQS1 362 aaPredicted RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 TOMM22Q9NS69 142 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 PIM2Q9P1W9 311 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 SAP30BPQ9UHR5 308 aaKnown RBP4.83□□□□□ -1.64
CD44-226ENST00000527889 DAGLAQ9Y4D2 1042 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 PCDHAC2Q9Y5I4 1007 aa4.83□□□□□ -1.64
CD44-226ENST00000527889 RLFQ13129 1914 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 GAKO14976 1311 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 GPR75-ASB3A0A0A6YYF3 556 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 FAM181BA6NEQ2 426 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 CLGNO14967 610 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 SIN3BO75182 1162 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 PRDM1O75626 825 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 RAD17O75943 681 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 BAG3O95817 575 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 CPB1P15086 417 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 MCM5P33992 734 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 RHBDL3P58872 404 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 TGFB2P61812 414 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 CCT2P78371 535 aaKnown RBP4.82□□□□□ -1.64
CD44-226ENST00000527889 RASSF7Q02833 373 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 TBC1D8BQ0IIM8 1120 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 TRDNQ13061 729 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 AP3B2Q13367 1082 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 IKBKEQ14164 716 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 NCAPHQ15003 741 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 ANKRD1Q15327 319 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 NFKBIBQ15653 356 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 LONRF2Q1L5Z9 754 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 SLC10A6Q3KNW5 377 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 PERM1Q5SV97 790 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 DACT2Q5SW24 774 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 WDR78Q5VTH9 848 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 OVOS1Q6IE37 1185 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 CTR9Q6PD62 1173 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 UNC5AQ6ZN44 842 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 MFSD6Q6ZSS7 791 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 THNSL2Q86YJ6 484 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 RTKN2Q8IZC4 609 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 NINJ1Q92982 152 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 ATG4CQ96DT6 458 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms