RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ATP11BQ9Y2G3 1177 aa23.28■■□□□ 1.32
CD44-222ENST00000526025 C17orf102A2RUQ5 167 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 PQBP1O60828 265 aaKnown RBP23.27■■□□□ 1.32
CD44-222ENST00000526025 PPP6R2O75170 966 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 SLITRK3O94933 977 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 RPA1P27694 616 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 LONP1P36776 959 aaKnown RBP23.27■■□□□ 1.32
CD44-222ENST00000526025 ADAM17P78536 824 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 PPFIA1Q13136 1202 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 XKR3Q5GH77 459 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 ZNF484Q5JVG2 852 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 BANK1Q8NDB2 785 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 LMBR1Q8WVP7 490 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 NRBP2Q9NSY0 501 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 PPME1Q9Y570 386 aa23.27■■□□□ 1.32
CD44-222ENST00000526025 SRPRBQ9Y5M8 271 aaKnown RBP23.27■■□□□ 1.32
CD44-222ENST00000526025 MBLAC1A4D2B0 266 aaPredicted RBP23.26■■□□□ 1.31
CD44-222ENST00000526025 VWA3AA6NCI4 1184 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 B4GALT4O60513 344 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 STBD1O95210 358 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 CHMP4BP1P59074 171 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 STK38Q15208 465 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 GRIK4Q16099 956 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 GDF6Q6KF10 455 aaPredicted RBP23.26■■□□□ 1.31
CD44-222ENST00000526025 CKAP2LQ8IYA6 745 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 KCTD17Q8N5Z5 321 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 DYDC2Q96IM9 177 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 NIFKQ9BYG3 293 aaKnown RBP23.26■■□□□ 1.31
CD44-222ENST00000526025 RGL1Q9NZL6 768 aa23.26■■□□□ 1.31
CD44-222ENST00000526025 EVI5O60447 810 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 CLTBP09497 229 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 SPATA31C1P0DKV0 1188 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 XRCC6P12956 609 aaKnown RBP eCLIP23.25■■□□□ 1.31
CD44-222ENST00000526025 INSRRP14616 1297 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 DNM1Q05193 864 aaKnown RBP23.25■■□□□ 1.31
CD44-222ENST00000526025 FAAP100Q0VG06 881 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 KRT79Q5XKE5 535 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 KCNG4Q8TDN1 519 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 CTAGE1Q96RT6 745 aa23.25■■□□□ 1.31
CD44-222ENST00000526025 FBXO2Q9UK22 296 aaPredicted RBP23.25■■□□□ 1.31
CD44-222ENST00000526025 SPTLC2O15270 562 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 RPLP2P05387 115 aaKnown RBP23.24■■□□□ 1.31
CD44-222ENST00000526025 KRT85P78386 507 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 CEBPZQ03701 1054 aaKnown RBP23.24■■□□□ 1.31
CD44-222ENST00000526025 PTGISQ16647 500 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 CATSPER3Q86XQ3 398 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 KRI1Q8N9T8 703 aaKnown RBP23.24■■□□□ 1.31
CD44-222ENST00000526025 TRPV6Q9H1D0 765 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 PDLIM7Q9NR12 457 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 TRMT13Q9NUP7 481 aaKnown RBP23.24■■□□□ 1.31
CD44-222ENST00000526025 SETD4Q9NVD3 440 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 TFIP11Q9UBB9 837 aaKnown RBP23.24■■□□□ 1.31
CD44-222ENST00000526025 TBX21Q9UL17 535 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 EVPLQ92817 2033 aa23.24■■□□□ 1.31
CD44-222ENST00000526025 ZBTB42B2RXF5 422 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 KIAA0355O15063 1070 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 CYP4A11Q02928 519 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 RBL2Q08999 1139 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 PTK7Q13308 1070 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 CTTNQ14247 550 aaKnown RBP23.23■■□□□ 1.31
CD44-222ENST00000526025 HIC1Q14526 733 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 TARBP2Q15633 366 aaKnown RBP23.23■■□□□ 1.31
CD44-222ENST00000526025 HYIQ5T013 277 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 SERINC5Q86VE9 423 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 TPH2Q8IWU9 490 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 DPF3Q92784 378 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 CHMP5Q9NZZ3 219 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 WRAP73Q9P2S5 460 aaPredicted RBP23.23■■□□□ 1.31
CD44-222ENST00000526025 TUBE1Q9UJT0 475 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 RCOR1Q9UKL0 485 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 NOD1Q9Y239 953 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 NR2E3Q9Y5X4 410 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 KDM3AQ9Y4C1 1321 aa23.23■■□□□ 1.31
CD44-222ENST00000526025 LTBP2Q14767 1821 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 TANC1Q9C0D5 1861 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 MED24O75448 989 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 MARCKSP29966 332 aaPredicted RBP23.22■■□□□ 1.31
CD44-222ENST00000526025 MLLT1Q03111 559 aaPredicted RBP23.22■■□□□ 1.31
CD44-222ENST00000526025 MARCH8Q5T0T0 291 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 TAF2Q6P1X5 1199 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 ANO5Q75V66 913 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 OTUD6AQ7L8S5 288 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 ZNF579Q8NAF0 562 aaKnown RBP23.22■■□□□ 1.31
CD44-222ENST00000526025 CAGE1Q8TC20 777 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 SNX29Q8TEQ0 813 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 ANKEF1Q9NU02 776 aa23.22■■□□□ 1.31
CD44-222ENST00000526025 MAGEB2O15479 319 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 CAND2O75155 1236 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 YWHABP31946 246 aaKnown RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 CCT6AP40227 531 aaKnown RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 RPAINQ86UA6 219 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 C7orf61Q8IZ16 206 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 CCDC155Q8N6L0 562 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 PPP1R13LQ8WUF5 828 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 NACC1Q96RE7 527 aa23.21■■□□□ 1.31
CD44-222ENST00000526025 MMTAG2Q9BU76 263 aaKnown RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 SCAND2PQ9GZW5 306 aaPredicted RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 SEPT9Q9UHD8 586 aaPredicted RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 DBR1Q9UK59 544 aaKnown RBP23.21■■□□□ 1.31
CD44-222ENST00000526025 PCDHA2Q9Y5H9 948 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms