RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MYH1P12882 1939 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 ZCCHC11Q5TAX3 1644 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 PALLDQ8WX93 1383 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 CTDSPL2Q05D32 466 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 MB21D2Q8IYB1 491 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.04□□□□□ -0.323e-6■■■■■ 37.8
LIMCH1-213ENST00000511496 TUBGCP5Q96RT8 1024 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 NOC4LQ9BVI4 516 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 TTYH3Q9C0H2 523 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 DDX18Q9NVP1 670 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 ANGEL1Q9UNK9 670 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 CCDC160A6NGH7 325 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 CCDC169A6NNP5 214 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 OPHN1O60890 802 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 EIF3BP55884 814 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 CNGA2Q16280 664 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 DENND2CQ68D51 928 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 FMO2Q99518 471 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 XDHP47989 1333 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 ARHGEF28Q8N1W1 1705 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 TMEM247A6NEH6 219 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 KRIT1O00522 736 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF213O14771 459 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CAPN9O14815 690 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 ZBTB43O43298 467 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 VARSP26640 1264 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 C16orf87Q6PH81 154 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 KCNN1Q92952 543 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 MIS12Q9H081 205 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 MYLK2Q9H1R3 596 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 PXDNLA1KZ92 1463 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 PDS5AQ29RF7 1337 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 GRID2IPA4D2P6 1211 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 VAV1P15498 845 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CLCN2P51788 898 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 MGAT5Q09328 741 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 KCNMA1Q12791 1236 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF658Q5TYW1 1059 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 AGGF1Q8N302 714 aaeCLIP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CSGALNACT2Q8N6G5 542 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CEP70Q8NHQ1 597 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 EPS8L3Q8TE67 593 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 NRG4Q8WWG1 115 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 RNF25Q96BH1 459 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 SUCLA2Q9P2R7 463 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 IFT172Q9UG01 1749 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 ITGA4P13612 1032 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CCNB1P14635 433 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 EEF1GP26641 437 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 IGBP1P78318 339 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 HPCAP84074 193 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 TTLL12Q14166 644 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 SLC29A2Q14542 456 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 PHLDB3Q6NSJ2 640 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 ENDOVQ8N8Q3 282 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 TBC1D16Q8TBP0 767 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 DHTKD1Q96HY7 919 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 CATSPER2Q96P56 530 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 HAPLN3Q96S86 360 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 TRIM51Q9BSJ1 452 aa13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 LARSQ9P2J5 1176 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-213ENST00000511496 MAP3K15Q6ZN16 1313 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 EPHB6O15197 1021 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 KCNQ3O43525 872 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 RAD21O60216 631 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 KRT36O76013 467 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 OAS1P00973 400 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 MMP1P03956 469 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 RPN1P04843 607 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 RPS6KA1Q15418 735 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF174Q15697 407 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 TMEM53Q6P2H8 277 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 APOA5Q6Q788 366 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 ECHDC2Q86YB7 292 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 SRPK1Q96SB4 655 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 TRAIPQ9BWF2 469 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 KIAA1683Q9H0B3 1180 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 ZMYND12Q9H0C1 365 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 CIDEBQ9UHD4 219 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 PLAGL2Q9UPG8 496 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 SUGT1Q9Y2Z0 365 aa13.02□□□□□ -0.32
LIMCH1-213ENST00000511496 KIF20BQ96Q89 1820 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 TRIM75PA6NK02 468 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 NKRFO15226 690 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 NFKBIAP25963 317 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 KLRC1P26715 233 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 NEK3P51956 506 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 ARID5AQ03989 594 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 KPNB1Q14974 876 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 LRRC74BQ6ZQY2 392 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 RFX8Q6ZV50 586 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 OSBP2Q969R2 916 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 AGAP3Q96P47 875 aa13.02□□□□□ -0.33
LIMCH1-213ENST00000511496 LRRC53A6NM62 1247 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 SIGLEC16A6NMB1 481 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 FOXO6A8MYZ6 492 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 P4HA2O15460 535 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 MAP3K7O43318 606 aa13.01□□□□□ -0.33
LIMCH1-213ENST00000511496 CBX6O95503 412 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms