RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 CHMP2AO43633 222 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 TACC1O75410 805 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 ALAS1P13196 640 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 HSD17B4P51659 736 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 PRKG1Q13976 671 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 LRRC41Q15345 812 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 CENPPQ6IPU0 288 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 CLEC4DQ8WXI8 215 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 SECISBP2LQ93073 1101 aaKnown RBP12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 CCDC102AQ96A19 550 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 FGFBP2Q9BYJ0 223 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 RRAGCQ9HB90 399 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 ZNF112Q9UJU3 913 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 PPP1R9AQ9ULJ8 1098 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 PLAGL2Q9UPG8 496 aa12.14□□□□□ -0.47
SH3RF1-203ENST00000508685 DDNO94850 711 aaPredicted RBP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 LCA5LO95447 670 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ATP1A1P05023 1023 aaKnown RBP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 CYP11B2P19099 503 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 RPA1P27694 616 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 HMGCS2P54868 508 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 SLC12A3P55017 1021 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 BACE1P56817 501 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 LRRC63Q05C16 580 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 COASYQ13057 564 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 PABPC4Q13310 644 aaKnown RBP eCLIP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 CEP55Q53EZ4 464 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ARSHQ5FYA8 562 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 LRCH2Q5VUJ6 765 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ZNF572Q7Z3I7 529 aaPredicted RBP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 GPBP1Q86WP2 473 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 CCDC155Q8N6L0 562 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 NUCKS1Q9H1E3 243 aaKnown RBP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 PICK1Q9NRD5 415 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 GINM1Q9NU53 330 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 RGL1Q9NZL6 768 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 TBC1D7Q9P0N9 293 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ZHX2Q9Y6X8 837 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 CAPN2P17655 700 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 VWA3BQ502W6 1294 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 OTOP1Q7RTM1 612 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 GUF1Q8N442 669 aaKnown RBP12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 MMGT1Q8N4V1 131 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ZNF280CQ8ND82 737 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 IL31RAQ8NI17 732 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 ERMNQ8TAM6 284 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 CAGE1Q8TC20 777 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 MMS19Q96T76 1030 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 PANK4Q9NVE7 773 aa12.13□□□□□ -0.47
SH3RF1-203ENST00000508685 KIF3CO14782 793 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 SLC26A4O43511 780 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 PSMD10O75832 226 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 ARP10275 920 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 ITGB5P18084 799 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 MAN2A1Q16706 1144 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 MIIPQ5JXC2 388 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 TEX2Q8IWB9 1127 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 COG1Q8WTW3 980 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 ATG4CQ96DT6 458 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 KLRG1Q96E93 195 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 ALS2CR12Q96Q35 445 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 EIF2AK1Q9BQI3 630 aaKnown RBP12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 AGPAT5Q9NUQ2 364 aa12.12□□□□□ -0.47
SH3RF1-203ENST00000508685 RASSF10A6NK89 507 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 VWA5AO00534 786 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 TCP1P17987 556 aaKnown RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 FAM26FQ5R3K3 315 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 CCNI2Q6ZMN8 369 aaPredicted RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 SLC5A5Q92911 643 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 TSG101Q99816 390 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 ZNF577Q9BSK1 485 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 EHMT1Q9H9B1 1298 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 LUC7LQ9NQ29 371 aaKnown RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 BMP2KQ9NSY1 1161 aaPredicted RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 RNF14Q9UBS8 474 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 TRIM10Q9UDY6 481 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 TSKSQ9UJT2 592 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 DNM3Q9UQ16 869 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 FAN1Q9Y2M0 1017 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 A0A0U1RQG5 324 aaPredicted RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 LRRIQ3A6PVS8 624 aaPredicted RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 ENC1O14682 589 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 GAS7O60861 476 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 CLSTN1O94985 981 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 ERCC3P19447 782 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 CTTNQ14247 550 aaKnown RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 RNF10Q8N5U6 811 aaKnown RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 PIGOQ8TEQ8 1089 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 CRACR2AQ9BSW2 395 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 BHMT2Q9H2M3 363 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 NDST4Q9H3R1 872 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 ZHX3Q9H4I2 956 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 AS3MTQ9HBK9 375 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 POLD4Q9HCU8 107 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 JADE2Q9NQC1 790 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 PKD2L1Q9P0L9 805 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 RIPK3Q9Y572 518 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 PCDHA2Q9Y5H9 948 aa12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 RBBP6Q7Z6E9 1792 aaKnown RBP12.11□□□□□ -0.47
SH3RF1-203ENST00000508685 PARP14Q460N5 1801 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms