RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ZNF862O60290 1169 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 MSCO60682 206 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 KINO60870 393 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 EYA4O95677 639 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 INHAP05111 366 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 MYL1P05976 194 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 MMP3P08254 477 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 ATP4AP20648 1035 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CST5P28325 142 aaPredicted RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 CCND3P30281 292 aaPredicted RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 STAT6P42226 847 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 STAT5BP51692 787 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 LBX1P52954 281 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 SLC12A3P55017 1021 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 PSMC6P62333 389 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CYP4A11Q02928 519 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CTTNQ14247 550 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 UGCGQ16739 394 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 FAM160B1Q5W0V3 765 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 SWSAP1Q6NVH7 229 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CNNM4Q6P4Q7 775 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 FBXO46Q6PJ61 603 aaPredicted RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 POTEGQ6S5H5 508 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 RBM43Q6ZSC3 357 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 KCNK18Q7Z418 384 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 TLK2Q86UE8 772 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 TPH2Q8IWU9 490 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 SYT2Q8N9I0 419 aaPredicted RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 BANK1Q8NDB2 785 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 AFG1LQ8WV93 481 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 LARP4BQ92615 738 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 RAD54LQ92698 747 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 ATP6V0A1Q93050 837 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 DHX58Q96C10 678 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CDK5RAP3Q96JB5 506 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 MTRQ99707 1265 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 C16orf70Q9BSU1 422 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 PANK2Q9BZ23 570 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 AP5M1Q9H0R1 490 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 TNMDQ9H2S6 317 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 CLSTN2Q9H4D0 955 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 SMARCAD1Q9H4L7 1026 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 HMX1Q9NP08 348 aaPredicted RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 ZNF302Q9NR11 478 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 ANKEF1Q9NU02 776 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 TMEM63CQ9P1W3 806 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 GABBR1Q9UBS5 961 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 DBR1Q9UK59 544 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 DNM3Q9UQ16 869 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 E9PMD0 336 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SORBS3O60504 671 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 KPNA6O60684 536 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 ADAMTS4O75173 837 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 LGALS2P05162 132 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 RARBP10826 455 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 PTGS1P23219 599 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CNGA1P29973 690 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CPT1AP50416 773 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SP4Q02446 784 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CACNB1Q02641 598 aaPredicted RBP8.04□□□□□ -1.12
NUP54-204ENST00000506098 MCM6Q14566 821 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 DGKDQ16760 1214 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 XKR3Q5GH77 459 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CCDC183Q5T5S1 534 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 LHX8Q68G74 356 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SV2BQ7L1I2 683 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CEP57L1Q8IYX8 460 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CNNM3Q8NE01 707 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 KLHDC9Q8NEP7 349 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SPATA20Q8TB22 786 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SYAP1Q96A49 352 aaPredicted RBP8.04□□□□□ -1.12
NUP54-204ENST00000506098 PAGE5Q96GU1 130 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 CCDC34Q96HJ3 373 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 PLIN2Q99541 437 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 C7orf25Q9BPX7 421 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 NIFKQ9BYG3 293 aaKnown RBP8.04□□□□□ -1.12
NUP54-204ENST00000506098 LRRC27Q9C0I9 530 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 NUP62CLQ9H1M0 184 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 AZI2Q9H6S1 392 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 PRDM10Q9NQV6 1147 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 DDX20Q9UHI6 824 aaKnown RBP8.04□□□□□ -1.12
NUP54-204ENST00000506098 PPME1Q9Y570 386 aa8.04□□□□□ -1.12
NUP54-204ENST00000506098 SYNRGQ9UMZ2 1314 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 TANC1Q9C0D5 1861 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 COL1A2P08123 1366 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 HAS3O00219 553 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 BACH1O14867 736 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 ZBTB39O15060 712 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 OATP04181 439 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 PLA2G4BP0C869 781 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 YWHABP31946 246 aaKnown RBP8.03□□□□□ -1.12
NUP54-204ENST00000506098 SARSP49591 514 aaKnown RBP8.03□□□□□ -1.12
NUP54-204ENST00000506098 RARRES1P49788 294 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 AMPD3Q01432 767 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 PRKCEQ02156 737 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 PLCB4Q15147 1175 aa8.03□□□□□ -1.12
NUP54-204ENST00000506098 TARBP2Q15633 366 aaKnown RBP8.03□□□□□ -1.12
NUP54-204ENST00000506098 ZRSR1Q15695 479 aaKnown RBP8.03□□□□□ -1.12
NUP54-204ENST00000506098 FSCN1Q16658 493 aaKnown RBP8.03□□□□□ -1.12
NUP54-204ENST00000506098 SLC9C1Q4G0N8 1177 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms