RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SPRED2Q7Z698 418 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 TRIM22Q8IYM9 498 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 SPRYD3Q8NCJ5 442 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 ATXN2LQ8WWM7 1075 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 TGS1Q96RS0 853 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 OSBPL7Q9BZF2 842 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 FAM49AQ9H0Q0 323 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 SMC3Q9UQE7 1217 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 PTPRSQ13332 1948 aa20.41■□□□□ 0.86
SQSTM1-209ENST00000504627 LINC01553A4QN01 128 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 CPLX1O14810 134 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 RPLP2P05387 115 aaKnown RBP20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 POU3F3P20264 500 aaPredicted RBP20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 HMGN5P82970 282 aaKnown RBP20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 SETQ01105 290 aaPredicted RBP20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 GRB10Q13322 594 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 PLCB4Q15147 1175 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 MARCH8Q5T0T0 291 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 FAM160B1Q5W0V3 765 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 CPLX2Q6PUV4 134 aaKnown RBP20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 UIMC1Q96RL1 719 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 ZNF577Q9BSK1 485 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 FOXD4L1Q9NU39 408 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 VPS54Q9P1Q0 977 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 TCEAL9Q9UHQ7 104 aa20.4■□□□□ 0.86
SQSTM1-209ENST00000504627 POTEB3A0JP26 581 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 M0QZ92 97 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 IPO5O00410 1097 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 CDKL5O76039 1030 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 ATG7O95352 703 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 SLC26A2P50443 739 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 NLRP5P59047 1200 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 MRPS5P82675 430 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 SSRP1Q08945 709 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 MKRN4PQ13434 485 aaPredicted RBP20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 POTEBQ6S5H4 581 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 RASGRP4Q8TDF6 673 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 GDPD5Q8WTR4 605 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 TOP1MTQ969P6 601 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 ZBTB10Q96DT7 871 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 YME1L1Q96TA2 773 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 CDY2AQ9Y6F7 541 aa20.39■□□□□ 0.85
SQSTM1-209ENST00000504627 IGLV3-22A0A075B6J6 115 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 ADAMTS3O15072 1205 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 CCNE2O96020 404 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 ERVK-21P61565 698 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 MGAT3Q09327 533 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 PRR16Q569H4 304 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 IER5Q5VY09 327 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 KRT40Q6A162 431 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 MIS18BP1Q6P0N0 1132 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 ABHD15Q6UXT9 468 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 NSUN7Q8NE18 718 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 CRYGNQ8WXF5 182 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 ASB2Q96Q27 587 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 ZNF302Q9NR11 478 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 TBC1D22BQ9NU19 505 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 KIF3AQ9Y496 699 aa20.38■□□□□ 0.85
SQSTM1-209ENST00000504627 MICAL3Q7RTP6 2002 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 PRRC2BQ5JSZ5 2229 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 MRPS6P82932 125 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 HTRA4P83105 476 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 LPIN1Q14693 890 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 SWSAP1Q6NVH7 229 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 CKAP2LQ8IYA6 745 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 TRAPPC12Q8WVT3 735 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 SH3GLB2Q9NR46 395 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 PCDHA2Q9Y5H9 948 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 TRANK1O15050 2925 aa20.37■□□□□ 0.85
SQSTM1-209ENST00000504627 STK36Q9NRP7 1315 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 IGKV6D-21A0A0A0MT36 114 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 DHX15O43143 795 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 HBP1O60381 514 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 CTDNEP1O95476 244 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 FBXO47Q5MNV8 452 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 PDXDC2PQ6P474 469 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 TSHZ1Q6ZSZ6 1077 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 CCDC60Q8IWA6 550 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 SUGCTQ9HAC7 445 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 CHMP5Q9NZZ3 219 aa20.36■□□□□ 0.85
SQSTM1-209ENST00000504627 LPXNO60711 386 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 GJB2P29033 226 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 TMEM62Q0P6H9 643 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 MTHFD1LQ6UB35 978 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 FBXO22Q8NEZ5 403 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 ATP8B4Q8TF62 1192 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 C17orf80Q9BSJ5 609 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 LMCD1Q9NZU5 365 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 SAMM50Q9Y512 469 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 TRPV2Q9Y5S1 764 aa20.35■□□□□ 0.85
SQSTM1-209ENST00000504627 SMIM35A0A1B0GVV1 85 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 JAK2O60674 1132 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 DEXIO95424 95 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 PSAPP07602 524 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 PDIA4P13667 645 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 PDCP20941 246 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 KLRC1P26715 233 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 CIITAP33076 1130 aa20.34■□□□□ 0.85
SQSTM1-209ENST00000504627 KRT76Q01546 638 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms