RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 BTG3Q14201 252 aaPredicted RBP25.18■■□□□ 1.62
HDDC3-203ENST00000494993 KRT32Q14532 448 aa25.18■■□□□ 1.62
HDDC3-203ENST00000494993 COL19A1Q14993 1142 aa25.18■■□□□ 1.62
HDDC3-203ENST00000494993 PUS10Q3MIT2 529 aaKnown RBP25.18■■□□□ 1.62
HDDC3-203ENST00000494993 CENPQQ7L2Z9 268 aaPredicted RBP25.18■■□□□ 1.62
HDDC3-203ENST00000494993 LMAN2LQ9H0V9 348 aa25.18■■□□□ 1.62
HDDC3-203ENST00000494993 POTEB3A0JP26 581 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 GRXCR2A6NFK2 248 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 DGKIO75912 1065 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 RCAN1P53805 252 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 TMEM62Q0P6H9 643 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 TMEM31Q5JXX7 168 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 POTEBQ6S5H4 581 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 NIPA1Q7RTP0 329 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 FTHL17Q9BXU8 183 aa25.17■■□□□ 1.62
HDDC3-203ENST00000494993 IGSF9BQ9UPX0 1349 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 IGKV6D-21A0A0A0MT36 114 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 SMIM35A0A1B0GVV1 85 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 GRM6O15303 877 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 ZNF76P36508 570 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 SLC26A2P50443 739 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 FNDC1Q4ZHG4 1894 aaPredicted RBP25.16■■□□□ 1.62
HDDC3-203ENST00000494993 EP400NLQ6ZTU2 488 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 RTN4RL1Q86UN2 441 aaPredicted RBP25.16■■□□□ 1.62
HDDC3-203ENST00000494993 GJD3Q8N144 294 aa25.16■■□□□ 1.62
HDDC3-203ENST00000494993 CELF4Q9BZC1 486 aaKnown RBP25.16■■□□□ 1.62
HDDC3-203ENST00000494993 KDM3AQ9Y4C1 1321 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 PI4K2BG5E9Z4 385 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 CDC45O75419 566 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 HMGB1P09429 215 aaKnown RBP25.15■■□□□ 1.62
HDDC3-203ENST00000494993 MTHFD1LQ6UB35 978 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 CRIPAKQ8N1N5 446 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 PADI3Q9ULW8 664 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 PLXNA4Q9HCM2 1894 aa25.15■■□□□ 1.62
HDDC3-203ENST00000494993 DDX39AO00148 427 aaKnown RBP25.14■■□□□ 1.62
HDDC3-203ENST00000494993 NCK2O43639 380 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 GPR37L1O60883 481 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 CCNE2O96020 404 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 PAK2Q13177 524 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 PFKFB3Q16875 520 aaPredicted RBP25.14■■□□□ 1.62
HDDC3-203ENST00000494993 JAKMIP3Q5VZ66 844 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 ABHD15Q6UXT9 468 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 NPAS4Q8IUM7 802 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 NME8Q8N427 588 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 PLVAPQ9BX97 442 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 C11orf16Q9NQ32 467 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 CLDND1Q9NY35 253 aa25.14■■□□□ 1.62
HDDC3-203ENST00000494993 NAP1L2Q9ULW6 460 aaPredicted RBP25.14■■□□□ 1.62
HDDC3-203ENST00000494993 FAM86B1E9PN63 330 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 BACH1O14867 736 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 HBP1O60381 514 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 FAM86B2P0C5J1 330 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 SSTR3P32745 418 aaPredicted RBP25.13■■□□□ 1.61
HDDC3-203ENST00000494993 ADD1P35611 737 aaKnown RBP25.13■■□□□ 1.61
HDDC3-203ENST00000494993 PLA2G5P39877 138 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 METAP2P50579 478 aaKnown RBP eCLIP25.13■■□□□ 1.61
HDDC3-203ENST00000494993 KRT76Q01546 638 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 FAM160B1Q5W0V3 765 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 PLA2G4DQ86XP0 818 aa25.13■■□□□ 1.61
HDDC3-203ENST00000494993 CMTR2Q8IYT2 770 aaKnown RBP25.13■■□□□ 1.61
HDDC3-203ENST00000494993 MRPL42Q9Y6G3 142 aaKnown RBP25.13■■□□□ 1.61
HDDC3-203ENST00000494993 IGLV3-22A0A075B6J6 115 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 MMP1P03956 469 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 STAG3L1P0CL83 205 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 SCG2P13521 617 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 KLRC1P26715 233 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 FGD1P98174 961 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 CCDC60Q8IWA6 550 aaPredicted RBP25.12■■□□□ 1.61
HDDC3-203ENST00000494993 ATP8B4Q8TF62 1192 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 CRYGNQ8WXF5 182 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 P2RX5Q93086 422 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 FAM50BQ9Y247 325 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 COL1A2P08123 1366 aa25.12■■□□□ 1.61
HDDC3-203ENST00000494993 CCDC196A0A1B0GTZ2 297 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 ESYT2A0FGR8 921 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 FAM86C2PA6NEL3 165 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 DHX15O43143 795 aaKnown RBP25.11■■□□□ 1.61
HDDC3-203ENST00000494993 CYP3A4P08684 503 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 CPA1P15085 419 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 LTBRP36941 435 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 APOBRQ0VD83 1088 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 HYAL1Q12794 435 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 CTC1Q2NKJ3 1217 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 FAM122AQ96E09 287 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 ZNF302Q9NR11 478 aa25.11■■□□□ 1.61
HDDC3-203ENST00000494993 NID2Q14112 1375 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 TMEM266Q2M3C6 531 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 MIS18BP1Q6P0N0 1132 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 PDXDC2PQ6P474 469 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 KCNB2Q92953 911 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 ZMYND12Q9H0C1 365 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 TMX1Q9H3N1 280 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 ALG13Q9NP73 1137 aaKnown RBP25.1■■□□□ 1.61
HDDC3-203ENST00000494993 PLAGL2Q9UPG8 496 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 HCN4Q9Y3Q4 1203 aa25.1■■□□□ 1.61
HDDC3-203ENST00000494993 IPO5O00410 1097 aaKnown RBP25.09■■□□□ 1.61
HDDC3-203ENST00000494993 CSPG5O95196 566 aa25.09■■□□□ 1.61
HDDC3-203ENST00000494993 PAN2Q504Q3 1202 aaKnown RBP25.09■■□□□ 1.61
HDDC3-203ENST00000494993 NAALADL2Q58DX5 795 aa25.09■■□□□ 1.61
HDDC3-203ENST00000494993 ZNF484Q5JVG2 852 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms