RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PABPC4Q13310 644 aaKnown RBP eCLIP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ADAM9Q13443 819 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 NFIXQ14938 502 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TMEM132BQ14DG7 1078 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SART3Q15020 963 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF174Q15697 407 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SMAD2Q15796 467 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF568Q3ZCX4 644 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 CFAP100Q494V2 611 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TMEM177Q53S58 311 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 PIK3R6Q5UE93 754 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 CPZQ66K79 652 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZCCHC8Q6NZY4 707 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 HHIPL2Q6UWX4 724 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 FRMD5Q7Z6J6 570 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 PLEKHH3Q7Z736 793 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF761Q86XN6 746 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 LGI4Q8N135 537 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 DTX3Q8N9I9 347 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TP53I13Q8NBR0 393 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TXNDC5Q8NBS9 432 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 HIPK4Q8NE63 616 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SH3RF2Q8TEC5 729 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 DDX1Q92499 740 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SCLYQ96I15 445 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 WNK4Q96J92 1243 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 RNPC3Q96LT9 517 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 BOCQ9BWV1 1114 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 PCIF1Q9H4Z3 704 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SMURF1Q9HCE7 757 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TRIM39Q9HCM9 518 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SLC39A2Q9NP94 309 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 JADE2Q9NQC1 790 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 KCNH7Q9NS40 1196 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 MAGEC2Q9UBF1 373 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 RBPJLQ9UBG7 517 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZDHHC9Q9Y397 364 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TELO2Q9Y4R8 837 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TNPO3Q9Y5L0 923 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 MRPL42Q9Y6G3 142 aaKnown RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF536O15090 1300 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 TCRBV5S4A2TA0A5A2 114 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 C9orf118A6NHY6 69 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 FAM90A27PA6NNH2 459 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 H7C1D1 291 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 M0R2C6 588 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 ACOT7O00154 380 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 FOXP2O15409 715 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 GAS7O60861 476 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 RFPL3O75679 317 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 JMJD7P0C870 316 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF28P17035 718 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 HERVK_113P62684 666 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 DLX2Q07687 328 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-208ENST00000490788 SURF1Q15526 300 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 WDR72Q3MJ13 1102 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 PHF19Q5T6S3 580 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CNNM4Q6P4Q7 775 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 OVCH1Q7RTY7 1134 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 IFNL2Q8IZJ0 200 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 STPG3Q8N7X2 389 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CHST14Q8NCH0 376 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CXorf38Q8TB03 319 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CALML6Q8TD86 181 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 ERCC4Q92889 916 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-208ENST00000490788 E2F7Q96AV8 911 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 TEPSINQ96N21 525 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CLUHP3Q96NS8 147 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 FEZ1Q99689 392 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 TACO1Q9BSH4 297 aaKnown RBP3.11□□□□□ -1.91
HMGB1-208ENST00000490788 PDGFDQ9GZP0 370 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-208ENST00000490788 KANSL2Q9H9L4 492 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 INCENPQ9NQS7 918 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 INTS7Q9NVH2 962 aaKnown RBP3.11□□□□□ -1.91
HMGB1-208ENST00000490788 IFT57Q9NWB7 429 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 RTEL1Q9NZ71 1219 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 CD2APQ9Y5K6 639 aa3.11□□□□□ -1.91
HMGB1-208ENST00000490788 A0A0G2JLL6 359 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 PTPDC1A2A3K4 754 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 NOBOXO60393 691 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 DNAJC8O75937 253 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 CNR2P34972 360 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 KIF11P52732 1056 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 MLLT6P55198 1093 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 NFATC3Q12968 1075 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 C21orf62-AS1Q17RA5 79 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 CDCA2Q69YH5 1023 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-208ENST00000490788 OTOP2Q7RTS6 562 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 FERMT3Q86UX7 667 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 PROSER1Q86XN7 944 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 PASD1Q8IV76 773 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 NIM1KQ8IY84 436 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 AHI1Q8N157 1196 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 KLHL36Q8N4N3 616 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 NINJ1Q92982 152 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 BORCS6Q96GS4 357 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 GBP4Q96PP9 640 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 XYLT2Q9H1B5 865 aa3.1□□□□□ -1.91
HMGB1-208ENST00000490788 ADAM7Q9H2U9 754 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms