RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 NSUN4Q96CB9 384 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 PLCD4Q9BRC7 762 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 GPATCH2Q9NW75 528 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NDOR1Q9UHB4 597 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 CNTNAP4Q9C0A0 1308 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 FIGNL2A6NMB9 653 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 GPR25O00155 361 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NR2F1P10589 423 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NCAM1P13591 858 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 ITIH2P19823 946 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NEK4P51957 841 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 TLE2Q04725 743 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 TRIM71Q2Q1W2 868 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 RNF220Q5VTB9 566 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NPNTQ6UXI9 565 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 CATSPERGQ6ZRH7 1159 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 PDZD4Q76G19 769 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 IGSF22Q8N9C0 903 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NSUN5Q96P11 429 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 FCRL3Q96P31 734 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 SMG9Q9H0W8 520 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 FBXO2Q9UK22 296 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 A0A087X0M5 115 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 A0A1B0GX30 115 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 BICDL2A1A5D9 508 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 SPDYE3A6NKU9 549 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 FAM155AB1AL88 458 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 HTRA2O43464 458 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 SLC26A4O43511 780 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 LTBRP36941 435 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 GPR15P49685 360 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 GEMIN4P57678 1058 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 ALDH1L2Q3SY69 923 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 TBC1D10BQ4KMP7 808 aaPredicted RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 CPOQ8IVL8 374 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 FAM46AQ96IP4 442 aaKnown RBP3.62□□□□□ -1.83
UBXN4-208ENST00000490163 NSMCE4AQ9NXX6 385 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 KCNK4Q9NYG8 393 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 RNF112Q9ULX5 631 aa3.62□□□□□ -1.83
UBXN4-208ENST00000490163 CHD1O14646 1710 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PTPDC1A2A3K4 754 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 NPC1O15118 1278 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 KPNA6O60684 536 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 EPXP11678 715 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 MAP2K3P46734 347 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 HNRNPUQ00839 825 aaKnown RBP eCLIP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PAK1Q13153 545 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PTRH1Q86Y79 214 aaKnown RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ANKRD18AQ8IVF6 992 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ADAMTS15Q8TE58 950 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 FBXW5Q969U6 566 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 CDC5LQ99459 802 aaKnown RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PPCSQ9HAB8 311 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 BLOC1S4Q9NUP1 217 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 C14orf119Q9NWQ9 140 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 DENND2AQ9ULE3 1009 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PHF24Q9UPV7 400 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 JAG2Q9Y219 1238 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 POLA1P09884 1462 aaPredicted RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ELL2O00472 640 aaPredicted RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 RPN1P04843 607 aaKnown RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ENDOUP21128 410 aaKnown RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 CD40P25942 277 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ADH7P40394 386 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 CORO7P57737 925 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 HERVK_113P62684 666 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 SLC35G1Q2M3R5 365 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 KRT25Q7Z3Z0 450 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 DENND1CQ8IV53 801 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 TMEM52Q8NDY8 209 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 IL31RAQ8NI17 732 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 ASAP3Q8TDY4 903 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 DPF3Q92784 378 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 MRGPRX1Q96LB2 322 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 CRB3Q9BUF7 120 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 EIF2AQ9BY44 585 aaKnown RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 AGXT2Q9BYV1 514 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 FAM204AQ9H8W3 233 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 TOPORSQ9NS56 1045 aaPredicted RBP3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PCDHB12Q9Y5F1 795 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 PDS5BQ9NTI5 1447 aa3.61□□□□□ -1.83
UBXN4-208ENST00000490163 TRBV23OR9-2A0A075B6M9 112 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 CCDC66A2RUB6 948 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 PPP1R11O60927 126 aaPredicted RBP3.6□□□□□ -1.83
UBXN4-208ENST00000490163 SEC24DO94855 1032 aaPredicted RBP3.6□□□□□ -1.83
UBXN4-208ENST00000490163 DHRS4L1P0CG22 281 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 ADH5P11766 374 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 VAV1P15498 845 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 SEC23AQ15436 765 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 STILQ15468 1287 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 FAM110CQ1W6H9 321 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 CLEC16AQ2KHT3 1053 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 FIGNQ5HY92 759 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 CCDC62Q6P9F0 684 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.6□□□□□ -1.83
UBXN4-208ENST00000490163 FAM26EQ8N5C1 309 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 PCYOX1LQ8NBM8 494 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 NMD3Q96D46 503 aaKnown RBP3.6□□□□□ -1.83
UBXN4-208ENST00000490163 FAM167AQ96KS9 214 aa3.6□□□□□ -1.83
UBXN4-208ENST00000490163 RIC8AQ9NPQ8 531 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms