RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RC3H2Q9HBD1 1191 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 NCOA5Q9HCD5 579 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-206ENST00000473405 POTEB3A0JP26 581 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 IPO5O00410 1097 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 RPLP2P05387 115 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 IFNAR1P17181 557 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 PSMA5P28066 241 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 PDIA3P30101 505 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 SLC26A2P50443 739 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 POTEBQ6S5H4 581 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 CCDC12Q8WUD4 166 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 LINC01599Q8WXQ3 324 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 HLA-CQ95604 372 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 RNF26Q9BY78 433 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 C6orf50Q9HD87 102 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 PCDHA2Q9Y5H9 948 aa21.38■■□□□ 1.01
CCDC88B-206ENST00000473405 LINC00271P0C7V0 271 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 TMEM62Q0P6H9 643 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 TOB2Q14106 344 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 RASGRP4Q8TDF6 673 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 SAMD11Q96NU1 681 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 UIMC1Q96RL1 719 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 TRIOO75962 3097 aa21.37■■□□□ 1.01
CCDC88B-206ENST00000473405 MYO7AQ13402 2215 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 EPB41L2O43491 1005 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 CD52P31358 61 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 IER5Q5VY09 327 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 MCTP2Q6DN12 878 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 MTHFD1LQ6UB35 978 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 RUFY3Q7L099 469 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 ATP8B4Q8TF62 1192 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 TNPO1Q92973 898 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 LENG9Q96B70 501 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 SLC26A6Q9BXS9 759 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 ZSWIM6Q9HCJ5 1215 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 TRPV2Q9Y5S1 764 aa21.36■■□□□ 1.01
CCDC88B-206ENST00000473405 ADGRA3Q8IWK6 1321 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 IGSF9BQ9UPX0 1349 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 SMIM35A0A1B0GVV1 85 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 ZBTB42B2RXF5 422 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 ENPP3O14638 875 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 BACH1O14867 736 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 ATP4AP20648 1035 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 GNA11P29992 359 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 CCT2P78371 535 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 SETQ01105 290 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 TMEM192Q8IY95 271 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 IL17RAQ96F46 866 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 ZNF577Q9BSK1 485 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 VPS54Q9P1Q0 977 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 SQORQ9Y6N5 450 aa21.35■■□□□ 1.01
CCDC88B-206ENST00000473405 KDM3AQ9Y4C1 1321 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 H3BNC9 293 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 EDIL3O43854 480 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 CIITAP33076 1130 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 AKAP17AQ02040 695 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 FAM160B1Q5W0V3 765 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 CRIPAKQ8N1N5 446 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 CCDC148Q8NFR7 591 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 BICD2Q8TD16 824 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 MRPL38Q96DV4 380 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 ZNF302Q9NR11 478 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 COL1A2P08123 1366 aa21.34■■□□□ 1.01
CCDC88B-206ENST00000473405 HBP1O60381 514 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 KLRC1P26715 233 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 PRR16Q569H4 304 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 ZNF746Q6NUN9 644 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 SWSAP1Q6NVH7 229 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 MIS18BP1Q6P0N0 1132 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 PDXDC2PQ6P474 469 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 ZNF689Q96CS4 500 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 CELF4Q9BZC1 486 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 TBC1D22BQ9NU19 505 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 PADI3Q9ULW8 664 aa21.33■■□□□ 1.01
CCDC88B-206ENST00000473405 M0QZ92 97 aa21.32■■□□□ 1
CCDC88B-206ENST00000473405 GPM6BQ13491 265 aa21.32■■□□□ 1
CCDC88B-206ENST00000473405 RTN4RL1Q86UN2 441 aaPredicted RBP21.32■■□□□ 1
CCDC88B-206ENST00000473405 NME8Q8N427 588 aa21.32■■□□□ 1
CCDC88B-206ENST00000473405 FIBCD1Q8N539 461 aa21.32■■□□□ 1
CCDC88B-206ENST00000473405 UPF3BQ9BZI7 483 aaKnown RBP21.32■■□□□ 1
CCDC88B-206ENST00000473405 UBE2ZQ9H832 354 aaPredicted RBP21.32■■□□□ 1
CCDC88B-206ENST00000473405 SH3GLB2Q9NR46 395 aa21.32■■□□□ 1
CCDC88B-206ENST00000473405 MAFBQ9Y5Q3 323 aaPredicted RBP21.32■■□□□ 1
CCDC88B-206ENST00000473405 FNDC1Q4ZHG4 1894 aaPredicted RBP21.31■■□□□ 1
CCDC88B-206ENST00000473405 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.31■■□□□ 1
CCDC88B-206ENST00000473405 C5orf67F2Z3F1 127 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 DGKIO75912 1065 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 CTNNB1P35222 781 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 KRT76Q01546 638 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 PAK2Q13177 524 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 ZNF484Q5JVG2 852 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 SMAP1Q8IYB5 467 aaPredicted RBP21.31■■□□□ 1
CCDC88B-206ENST00000473405 KIAA0319LQ8IZA0 1049 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 CLP1Q92989 425 aaKnown RBP21.31■■□□□ 1
CCDC88B-206ENST00000473405 FTHL17Q9BXU8 183 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 TM6SF1Q9BZW5 370 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 TMX1Q9H3N1 280 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 CYP46A1Q9Y6A2 500 aa21.31■■□□□ 1
CCDC88B-206ENST00000473405 C22orf31O95567 290 aa21.3■■□□□ 1
CCDC88B-206ENST00000473405 PTPROQ16827 1216 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms