RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SNX14Q9Y5W7 946 aa22.48■■□□□ 1.19
COL9A3-210ENST00000472880 NID2Q14112 1375 aa22.48■■□□□ 1.19
COL9A3-210ENST00000472880 NCOR1O75376 2440 aa22.48■■□□□ 1.19
COL9A3-210ENST00000472880 FAM86B1E9PN63 330 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 ATG7O95352 703 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 CCNE2O96020 404 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 FAM86B2P0C5J1 330 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 HSPA4P34932 840 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 PAK2Q13177 524 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 BTG3Q14201 252 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-210ENST00000472880 REXO1Q8N1G1 1221 aaKnown RBP22.47■■□□□ 1.19
COL9A3-210ENST00000472880 C11orf84Q9BUA3 381 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-210ENST00000472880 ZMYND12Q9H0C1 365 aa22.47■■□□□ 1.19
COL9A3-210ENST00000472880 NSUN3Q9H649 340 aaKnown RBP22.47■■□□□ 1.19
COL9A3-210ENST00000472880 RC3H2Q9HBD1 1191 aaKnown RBP22.47■■□□□ 1.19
COL9A3-210ENST00000472880 BDP1A6H8Y1 2624 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 IGKV6D-21A0A0A0MT36 114 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 SMIM35A0A1B0GVV1 85 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 IPO5O00410 1097 aaKnown RBP22.46■■□□□ 1.19
COL9A3-210ENST00000472880 RB1P06400 928 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 SETQ01105 290 aaPredicted RBP22.46■■□□□ 1.19
COL9A3-210ENST00000472880 AKAP17AQ02040 695 aaKnown RBP22.46■■□□□ 1.19
COL9A3-210ENST00000472880 MIS18BP1Q6P0N0 1132 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 MTHFD1LQ6UB35 978 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 LINC01599Q8WXQ3 324 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 CELF4Q9BZC1 486 aaKnown RBP22.46■■□□□ 1.19
COL9A3-210ENST00000472880 ZNF302Q9NR11 478 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 TCEAL9Q9UHQ7 104 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 IGSF9BQ9UPX0 1349 aa22.46■■□□□ 1.19
COL9A3-210ENST00000472880 IGLV3-22A0A075B6J6 115 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 C5orf67F2Z3F1 127 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 HBP1O60381 514 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 CYP3A4P08684 503 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 KRT76Q01546 638 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 TCEAL5Q5H9L2 206 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 PDXDC2PQ6P474 469 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 ABHD15Q6UXT9 468 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 CCDC60Q8IWA6 550 aaPredicted RBP22.45■■□□□ 1.18
COL9A3-210ENST00000472880 NME8Q8N427 588 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 ATP8B4Q8TF62 1192 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 CCDC136Q96JN2 1154 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 ZNF577Q9BSK1 485 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 PADI3Q9ULW8 664 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 COL1A2P08123 1366 aa22.45■■□□□ 1.18
COL9A3-210ENST00000472880 PRPF3O43395 683 aaKnown RBP22.44■■□□□ 1.18
COL9A3-210ENST00000472880 DGKIO75912 1065 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 REC8O95072 547 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 RPS6KB1P23443 525 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 GNA11P29992 359 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 BMPR1AP36894 532 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 TTC3P53804 2025 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 NPAS4Q8IUM7 802 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 CRYGNQ8WXF5 182 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 CLP1Q92989 425 aaKnown RBP22.44■■□□□ 1.18
COL9A3-210ENST00000472880 PHKBQ93100 1093 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 ZNF689Q96CS4 500 aaPredicted RBP22.44■■□□□ 1.18
COL9A3-210ENST00000472880 LMAN2LQ9H0V9 348 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 KDM3AQ9Y4C1 1321 aa22.44■■□□□ 1.18
COL9A3-210ENST00000472880 BRWD1Q9NSI6 2320 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 DHX15O43143 795 aaKnown RBP22.43■■□□□ 1.18
COL9A3-210ENST00000472880 LINC00271P0C7V0 271 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 KLRC1P26715 233 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 PSMA5P28066 241 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 PKN1Q16512 942 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 PTCRAQ6ISU1 281 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-210ENST00000472880 EP400NLQ6ZTU2 488 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 CKAP2LQ8IYA6 745 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 FBXL16Q8N461 479 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 CCDC148Q8NFR7 591 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-210ENST00000472880 BICD2Q8TD16 824 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 PABPC5Q96DU9 382 aaKnown RBP22.43■■□□□ 1.18
COL9A3-210ENST00000472880 UIMC1Q96RL1 719 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 TBC1D22BQ9NU19 505 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 GINS2Q9Y248 185 aa22.43■■□□□ 1.18
COL9A3-210ENST00000472880 LOXHD1Q8IVV2 1947 aa22.42■■□□□ 1.18
COL9A3-210ENST00000472880 STAG3L1P0CL83 205 aa22.42■■□□□ 1.18
COL9A3-210ENST00000472880 PUS10Q3MIT2 529 aaKnown RBP22.42■■□□□ 1.18
COL9A3-210ENST00000472880 ZNF484Q5JVG2 852 aa22.42■■□□□ 1.18
COL9A3-210ENST00000472880 SWSAP1Q6NVH7 229 aa22.42■■□□□ 1.18
COL9A3-210ENST00000472880 CMTR2Q8IYT2 770 aaKnown RBP22.42■■□□□ 1.18
COL9A3-210ENST00000472880 RNF26Q9BY78 433 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-210ENST00000472880 AGXT2Q9BYV1 514 aa22.42■■□□□ 1.18
COL9A3-210ENST00000472880 H3BQ06 376 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-210ENST00000472880 ADAMTS3O15072 1205 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 GRM6O15303 877 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 IL9P15248 144 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 TMEM266Q2M3C6 531 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 PRR16Q569H4 304 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 ZNF746Q6NUN9 644 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-210ENST00000472880 RTN4RL1Q86UN2 441 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-210ENST00000472880 SMAP1Q8IYB5 467 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-210ENST00000472880 NEK9Q8TD19 979 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 PLVAPQ9BX97 442 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 SLC26A6Q9BXS9 759 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 EPHX3Q9H6B9 360 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 LRFN2Q9ULH4 789 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 ATG2AQ2TAZ0 1938 aa22.41■■□□□ 1.18
COL9A3-210ENST00000472880 PPFIA3O75145 1194 aa22.4■■□□□ 1.18
COL9A3-210ENST00000472880 PSAPP07602 524 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms