RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SLC26A6Q9BXS9 759 aa5.46□□□□□ -1.54
SF3B1-208ENST00000470268 RPAP3Q9H6T3 665 aaPredicted RBP5.46□□□□□ -1.54
SF3B1-208ENST00000470268 RIOX1Q9H6W3 641 aa5.46□□□□□ -1.54
SF3B1-208ENST00000470268 JMJD4Q9H9V9 463 aa5.46□□□□□ -1.54
SF3B1-208ENST00000470268 VAT1LQ9HCJ6 419 aa5.46□□□□□ -1.54
SF3B1-208ENST00000470268 RBM28Q9NW13 759 aaKnown RBP5.46□□□□□ -1.54
SF3B1-208ENST00000470268 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.46□□□□□ -1.54
SF3B1-208ENST00000470268 PCNTO95613 3336 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 CCDC196A0A1B0GTZ2 297 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 EREGO14944 169 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 DHX16O60231 1041 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PEX10O60683 326 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 MMP20O60882 483 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PPP1R11O60927 126 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 RECKO95980 971 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 RARAP10276 462 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 HOXD8P13378 290 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 CES1P23141 567 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 NKAPLQ5M9Q1 402 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 CATSPERGQ6ZRH7 1159 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 HOMER1Q86YM7 354 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 BRI3BPQ8WY22 251 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 MTMR8Q96EF0 704 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PNMA5Q96PV4 448 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PIGSQ96S52 555 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 LLPHQ9BRT6 129 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SPZ1Q9BXG8 430 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 RNF26Q9BY78 433 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PRDM6Q9NQX0 595 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ZFATQ9P243 1243 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ORC3Q9UBD5 711 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ISY1Q9ULR0 285 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ABT1Q9ULW3 272 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 AK5Q9Y6K8 562 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 MYH4Q9Y623 1939 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SCO2A0A1W2PP80 73 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ADAMTS3O15072 1205 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PRPF3O43395 683 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 FLOT1O75955 427 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 HSP90AA1P07900 732 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ZBTB48P10074 688 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 NFKB1P19838 968 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SMARCA1P28370 1054 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 GNAQP50148 359 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 STAT2P52630 851 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 PCBP4P57723 403 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SSRP1Q08945 709 aaKnown RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SNAPC2Q13487 334 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SYDE2Q5VT97 1194 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 OTUD7BQ6GQQ9 843 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 CYP4F22Q6NT55 531 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 GADL1Q6ZQY3 521 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 FAM43AQ8N2R8 423 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ATG4CQ96DT6 458 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 CHAMP1Q96JM3 812 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SLC30A3Q99726 388 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 TANGO6Q9C0B7 1094 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 RNF19AQ9NV58 838 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 TMOD4Q9NZQ9 345 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 SMC3Q9UQE7 1217 aa5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.45□□□□□ -1.54
SF3B1-208ENST00000470268 ZNF536O15090 1300 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 STK36Q9NRP7 1315 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 CCL15-CCL14A0A0B4J2E2 113 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 RASSF10A6NK89 507 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 ADARB2-AS1A8MUL3 147 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 BTBD19C9JJ37 291 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 IGF2BP3O00425 579 aaKnown RBP eCLIP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 PLA2G6O60733 806 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 SIN3BO75182 1162 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 CDKL5O76039 1030 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 EDN3P14138 238 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 SYT1P21579 422 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 HOXA7P31268 230 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 DEKP35659 375 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 HMGN5P82970 282 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 IKQ13123 557 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 NPY5RQ15761 445 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 CDC37Q16543 378 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 CCL15Q16663 113 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 PFKFB3Q16875 520 aaPredicted RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 QRICH1Q2TAL8 776 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 WWC2Q6AWC2 1192 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 KRT25Q7Z3Z0 450 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 PRPF38AQ8NAV1 312 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 REPS2Q8NFH8 660 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 EPS8L3Q8TE67 593 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 HHIPL1Q96JK4 782 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 FAM161BQ96MY7 647 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 P2RX7Q99572 595 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 SLF1Q9BQI6 1058 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 LZTS2Q9BRK4 669 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 RANBP17Q9H2T7 1088 aaKnown RBP5.44□□□□□ -1.54
SF3B1-208ENST00000470268 FEM1BQ9UK73 627 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 PPP1R9AQ9ULJ8 1098 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 ADAMTS5Q9UNA0 930 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 AGTPBP1Q9UPW5 1226 aa5.44□□□□□ -1.54
SF3B1-208ENST00000470268 ZDHHC9Q9Y397 364 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms