RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 APOBRQ0VD83 1088 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 JAKMIP3Q5VZ66 844 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 FAM160B1Q5W0V3 765 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 BLOC1S2Q6QNY1 142 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 Q6ZUG5 572 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 PLA2G4DQ86XP0 818 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 NME8Q8N427 588 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 TRAPPC12Q8WVT3 735 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 CRYGNQ8WXF5 182 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 BRF1Q92994 677 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 JAKMIP1Q96N16 626 aaKnown RBP19.9■□□□□ 0.78
COL7A1-208ENST00000470076 ZMYND12Q9H0C1 365 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 C6orf50Q9HD87 102 aa19.9■□□□□ 0.78
COL7A1-208ENST00000470076 FAM86B1E9PN63 330 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 BACH1O14867 736 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 HBP1O60381 514 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 CCNE2O96020 404 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 FAM86B2P0C5J1 330 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 CPA1P15085 419 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 BMPR1AP36894 532 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 NID2Q14112 1375 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 MTHFD1LQ6UB35 978 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 ABHD15Q6UXT9 468 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 FAM43BQ6ZT52 329 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 FBXL16Q8N461 479 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 CLP1Q92989 425 aaKnown RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 ZNF689Q96CS4 500 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 C11orf84Q9BUA3 381 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 CELF4Q9BZC1 486 aaKnown RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 NSUN3Q9H649 340 aaKnown RBP19.89■□□□□ 0.77
COL7A1-208ENST00000470076 IGSF9BQ9UPX0 1349 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 KDM3AQ9Y4C1 1321 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 SNX14Q9Y5W7 946 aa19.89■□□□□ 0.77
COL7A1-208ENST00000470076 IGLV3-22A0A075B6J6 115 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 DDX39AO00148 427 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 IPO5O00410 1097 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 DHX15O43143 795 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 PRPF3O43395 683 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 DGKIO75912 1065 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 LINC00271P0C7V0 271 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 TMEM62Q0P6H9 643 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 BTG3Q14201 252 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 REXO1Q8N1G1 1221 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 ATP8B4Q8TF62 1192 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 LMAN2LQ9H0V9 348 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 PADI3Q9ULW8 664 aa19.88■□□□□ 0.77
COL7A1-208ENST00000470076 MYH9P35579 1960 aaKnown RBP19.88■□□□□ 0.77
COL7A1-208ENST00000470076 COL1A2P08123 1366 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 KLRC1P26715 233 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 GNA11P29992 359 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 SETQ01105 290 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-208ENST00000470076 KRT76Q01546 638 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 PAK2Q13177 524 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 PKN1Q16512 942 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 PUS10Q3MIT2 529 aaKnown RBP19.87■□□□□ 0.77
COL7A1-208ENST00000470076 TCEAL5Q5H9L2 206 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 MIS18BP1Q6P0N0 1132 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 CCDC60Q8IWA6 550 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-208ENST00000470076 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-208ENST00000470076 NEK9Q8TD19 979 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 LINC01599Q8WXQ3 324 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 PABPC5Q96DU9 382 aaKnown RBP19.87■□□□□ 0.77
COL7A1-208ENST00000470076 AGXT2Q9BYV1 514 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 ZNF302Q9NR11 478 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 TBC1D22BQ9NU19 505 aa19.87■□□□□ 0.77
COL7A1-208ENST00000470076 STAG3L1P0CL83 205 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 RPS6KB1P23443 525 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 PSMA5P28066 241 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 AKAP17AQ02040 695 aaKnown RBP19.86■□□□□ 0.77
COL7A1-208ENST00000470076 COL19A1Q14993 1142 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 ZNF484Q5JVG2 852 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 PDXDC2PQ6P474 469 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 RTN4RL1Q86UN2 441 aaPredicted RBP19.86■□□□□ 0.77
COL7A1-208ENST00000470076 NPAS4Q8IUM7 802 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 CRIPAKQ8N1N5 446 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 BICD2Q8TD16 824 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 ZNF577Q9BSK1 485 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 PLVAPQ9BX97 442 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 EVPLQ92817 2033 aa19.86■□□□□ 0.77
COL7A1-208ENST00000470076 NCK2O43639 380 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 REC8O95072 547 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 PTCRAQ6ISU1 281 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-208ENST00000470076 ZNF746Q6NUN9 644 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-208ENST00000470076 SWSAP1Q6NVH7 229 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 FAM178BQ8IXR5 827 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 SMAP1Q8IYB5 467 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-208ENST00000470076 CMTR2Q8IYT2 770 aaKnown RBP19.85■□□□□ 0.77
COL7A1-208ENST00000470076 CCDC148Q8NFR7 591 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 RNF26Q9BY78 433 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-208ENST00000470076 TCEAL9Q9UHQ7 104 aa19.85■□□□□ 0.77
COL7A1-208ENST00000470076 ATG2AQ2TAZ0 1938 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 GRXCR2A6NFK2 248 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 GRM6O15303 877 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 NTRK3Q16288 839 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 KIAA0319LQ8IZA0 1049 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 PHKBQ93100 1093 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 CCDC136Q96JN2 1154 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 EPHX3Q9H6B9 360 aa19.84■□□□□ 0.77
COL7A1-208ENST00000470076 MAFBQ9Y5Q3 323 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-208ENST00000470076 H3BQ06 376 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms