RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 KLHL40Q2TBA0 621 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 PROX2Q3B8N5 592 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 RRAGBQ5VZM2 374 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 MFSD14CQ5VZR4 134 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 KRT79Q5XKE5 535 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 NCAPH2Q6IBW4 605 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 METTL7BQ6UX53 244 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 MIER3Q7Z3K6 550 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 TPH2Q8IWU9 490 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 C4orf19Q8IY42 314 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 KCTD17Q8N5Z5 321 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 PDILTQ8N807 584 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 IQUBQ8NA54 791 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 ANKK1Q8NFD2 765 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 RDM1Q8NG50 284 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 MRPS27Q92552 414 aaKnown RBP6.68□□□□□ -1.34
USP39-213ENST00000467885 EMID1Q96A84 441 aaPredicted RBP6.68□□□□□ -1.34
USP39-213ENST00000467885 PAGE5Q96GU1 130 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 SDF4Q9BRK5 362 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 TUFT1Q9NNX1 390 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 KBTBD4Q9NVX7 518 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 FAM13BQ9NYF5 915 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 KIAA1024Q9UPX6 916 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 TRIM17Q9Y577 477 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 PCDHGA10Q9Y5H3 936 aa6.68□□□□□ -1.34
USP39-213ENST00000467885 COL11A1P12107 1806 aaPredicted RBP6.68□□□□□ -1.34
USP39-213ENST00000467885 E9PMD0 336 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 NKRFO15226 690 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP39-213ENST00000467885 CHMP2AO43633 222 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 DUSP11O75319 330 aaKnown RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 GH1P01241 217 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 PSAPP07602 524 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 SUPT20HL2P0C7V6 817 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 HOXD8P13378 290 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 PLCG1P19174 1290 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 COL9A1P20849 921 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 PTMSP20962 102 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CCND3P30281 292 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 GRK4P32298 578 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CCT6AP40227 531 aaKnown RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 QARSP47897 775 aaKnown RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 SARSP49591 514 aaKnown RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 JAK3P52333 1124 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 LBX1P52954 281 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CAMK4Q16566 473 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 UGCGQ16739 394 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 TMEM119Q4V9L6 283 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 ARSHQ5FYA8 562 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CCSAPQ6IQ19 270 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 PDXDC2PQ6P474 469 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 KRBA2Q6ZNG9 492 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 PLPPR4Q7Z2D5 763 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 SMAP1Q8IYB5 467 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 SYT2Q8N9I0 419 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 PIGOQ8TEQ8 1089 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 AFG1LQ8WV93 481 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 DHX58Q96C10 678 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 DDX27Q96GQ7 796 aaKnown RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 SPATA33Q96N06 139 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 NACC1Q96RE7 527 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CEP89Q96ST8 783 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 C16orf70Q9BSU1 422 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 RAB34Q9BZG1 259 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 RNPEPQ9H4A4 650 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 ZSWIM4Q9H7M6 989 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 JPH1Q9HDC5 661 aaPredicted RBP6.67□□□□□ -1.34
USP39-213ENST00000467885 PDLIM7Q9NR12 457 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 TMEM63CQ9P1W3 806 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CCDC39Q9UFE4 941 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 USP25Q9UHP3 1055 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 DNM3Q9UQ16 869 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 PTCH2Q9Y6C5 1203 aa6.67□□□□□ -1.34
USP39-213ENST00000467885 CEP350Q5VT06 3117 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 WDR64B1ANS9 1081 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 SEPT4O43236 478 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 MBD3O95983 291 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 TCF7P36402 384 aaPredicted RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 STAT5BP51692 787 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 SLC12A3P55017 1021 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 GJA9P57773 515 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 PSMC5P62195 406 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 CYP4A11Q02928 519 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 MCM6Q14566 821 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 TARBP2Q15633 366 aaKnown RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 MIS18BP1Q6P0N0 1132 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 CCDC73Q6ZRK6 1079 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 RBM43Q6ZSC3 357 aaKnown RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 ANO5Q75V66 913 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 CCDC60Q8IWA6 550 aaPredicted RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 BANK1Q8NDB2 785 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 KLHDC9Q8NEP7 349 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 PPTC7Q8NI37 304 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 SPATA20Q8TB22 786 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 RAET1EQ8TD07 263 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 AFAP1L1Q8TED9 768 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 SNX29Q8TEQ0 813 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 RAD54LQ92698 747 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 STAMQ92783 540 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 DNAJC19Q96DA6 116 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 CALML4Q96GE6 196 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms