RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 PCDHB6Q9Y5E3 794 aa13.54□□□□□ -0.24
SHROOM3-202ENST00000466541 MAFBQ9Y5Q3 323 aaPredicted RBP13.54□□□□□ -0.24
SHROOM3-202ENST00000466541 TMEM150BA6NC51 233 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 DDX11L8A8MPP1 907 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 ZNF862O60290 1169 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 HBP1O60381 514 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 OATP04181 439 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 IQCF3P0C7M6 154 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 SYT1P21579 422 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 TECP42680 631 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 SLC26A2P50443 739 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 CYP4A11Q02928 519 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 TMEM62Q0P6H9 643 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 PPP2R5CQ13362 524 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 CTTNQ14247 550 aaKnown RBP13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 SHHQ15465 462 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 MARCH8Q5T0T0 291 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 LRRC8DQ7L1W4 858 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 CAGE1Q8TC20 777 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 DNAJB3Q8WWF6 145 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 MTMR9Q96QG7 549 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 NRBP2Q9NSY0 501 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 RGL1Q9NZL6 768 aa13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 SEPT9Q9UHD8 586 aaPredicted RBP13.53□□□□□ -0.24
SHROOM3-202ENST00000466541 POTEMA6NI47 508 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 RRN3P2A6NIE6 340 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 PITPNM1O00562 1244 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 OR52Z1P0C646 297 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 SELPP16109 830 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 KLRC1P26715 233 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 BMP8BP34820 402 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 TRAPPC10P48553 1259 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 PTGDRQ13258 359 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 ZNF484Q5JVG2 852 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 HABP4Q5JVS0 413 aaKnown RBP13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 MTHFD1LQ6UB35 978 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 ZNF365Q70YC5 407 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 C16orf59Q7L2K0 433 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 OTOP2Q7RTS6 562 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 TPH2Q8IWU9 490 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 TDHQ8IZJ6 230 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 METTL13Q8N6R0 699 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 RDM1Q8NG50 284 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 BBXQ8WY36 941 aaPredicted RBP13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 DYDC2Q96IM9 177 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 RNPC3Q96LT9 517 aaKnown RBP13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 PPP1R16BQ96T49 567 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 IL23AQ9NPF7 189 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 TANC1Q9C0D5 1861 aa13.52□□□□□ -0.25
SHROOM3-202ENST00000466541 LAMA2P24043 3122 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 LOXHD1Q8IVV2 1947 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 IGSF9BQ9UPX0 1349 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 A0A087WWV3 80 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 ZBBXA8MT70 800 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 RSPH10B2B2RC85 870 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 P4HBP07237 508 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 RSPH10BP0C881 870 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 HOXC8P31273 242 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 QARSP47897 775 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 PSMC5P62195 406 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 ADAM17P78536 824 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 EPHA7Q15375 998 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 TRIM71Q2Q1W2 868 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 MTERF2Q49AM1 385 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 PLA2G4FQ68DD2 849 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 B3GNT9Q6UX72 402 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 RSPH3Q86UC2 560 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 RPUSD2Q8IZ73 545 aaKnown RBP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 FAM167AQ96KS9 214 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 PRO3102Q9H379 93 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 SUGCTQ9HAC7 445 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 GINS2Q9Y248 185 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 TET1Q8NFU7 2136 aa13.51□□□□□ -0.25
SHROOM3-202ENST00000466541 MBLAC1A4D2B0 266 aaPredicted RBP13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 ZBTB42B2RXF5 422 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 STX6O43752 255 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 FGBP02675 491 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 TMEM266Q2M3C6 531 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 RILPL1Q5EBL4 403 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 TMEM240Q5SV17 173 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 TAF2Q6P1X5 1199 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 EIF2AK1Q9BQI3 630 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 LXNQ9BS40 222 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 PCDHA2Q9Y5H9 948 aa13.5□□□□□ -0.25
SHROOM3-202ENST00000466541 M0QZ92 97 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 ZBTB39O15060 712 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 NBNO60934 754 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 C22orf31O95567 290 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 CLCN3P51790 818 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 NPEPPSP55786 919 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 CEBPZQ03701 1054 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 SPIRE1Q08AE8 756 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 TBC1D8BQ0IIM8 1120 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 FOXD4L6Q3SYB3 417 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 XKR3Q5GH77 459 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 FAM173BQ6P4H8 233 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 PSRC1Q6PGN9 363 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 FOXD4L3Q6VB84 417 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 BRAPQ7Z569 592 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms