RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ALG13	Q9NP73	1137 aa	Known RBP	12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	SLC9A2	Q9UBY0	812 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	PADI3	Q9ULW8	664 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	TRPV2	Q9Y5S1	764 aa		12.79	□□□□□ -0.36
PTPN7-204	ENST00000462815	DMD	P11532	3685 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	RRN3P2	A6NIE6	340 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	MGEA5	O60502	916 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CCNE2	O96020	404 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	RPLP2	P05387	115 aa	Known RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CALM1	P0DP23	149 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CALM2	P0DP24	149 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CALM3	P0DP25	149 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	AR	P10275	920 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CLK2	P49760	499 aa	Known RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	GATM	P50440	423 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	ACTR2	P61160	394 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	TMEM62	Q0P6H9	643 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CLUL1	Q15846	466 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	NAALADL2	Q58DX5	795 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CREB3L3	Q68CJ9	461 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	HFE2	Q6ZVN8	426 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	PLPPR4	Q7Z2D5	763 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	TMTC2	Q8N394	836 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	CRYGN	Q8WXF5	182 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	PGBD1	Q96JS3	809 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	FTHL17	Q9BXU8	183 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	FAM49A	Q9H0Q0	323 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	AGO4	Q9HCK5	861 aa	Known RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	FAM50B	Q9Y247	325 aa		12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN7-204	ENST00000462815	SMIM35	A0A1B0GVV1	85 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	CCDC69	A6NI79	296 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	SPDYE3	A6NKU9	549 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	ZBTB42	B2RXF5	422 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	MEIS1	O00470	390 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	CSPP1	Q1MSJ5	1256 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	IER5	Q5VY09	327 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	MTHFD1L	Q6UB35	978 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	NFXL1	Q6ZNB6	911 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	HEATR3	Q7Z4Q2	680 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	CCDC82	Q8N4S0	544 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	EFHB	Q8N7U6	833 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	KLHL23	Q8NBE8	558 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	SMRP1	Q8NCR6	262 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	TMEM40	Q8WWA1	233 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	ESYT1	Q9BSJ8	1104 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	CELF4	Q9BZC1	486 aa	Known RBP	12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	ERVK-5	Q9HDB9	667 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	RIC8A	Q9NPQ8	531 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	MUTYH	Q9UIF7	546 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	CD207	Q9UJ71	328 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	PCDHGC5	Q9Y5F6	944 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	TECTA	O75443	2155 aa		12.77	□□□□□ -0.37
PTPN7-204	ENST00000462815	STXBP3	O00186	592 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	ADAMTS3	O15072	1205 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	DHX15	O43143	795 aa	Known RBP	12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	SCG2	P13521	617 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	ATP4A	P20648	1035 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	SREBF1	P36956	1147 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	EXOSC10	Q01780	885 aa	Known RBP	12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	NHLH1	Q02575	133 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	COASY	Q13057	564 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	CEP55	Q53EZ4	464 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	PPP1R18	Q6NYC8	613 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	APOA5	Q6Q788	366 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	ABHD15	Q6UXT9	468 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	MICU3	Q86XE3	530 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	RNF135	Q8IUD6	432 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	TEX2	Q8IWB9	1127 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	VN1R2	Q8NFZ6	395 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	FBXL18	Q96ME1	805 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	ANO3	Q9BYT9	981 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	CDHR5	Q9HBB8	845 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	BRPF3	Q9ULD4	1205 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	SLC12A7	Q9Y666	1083 aa		12.76	□□□□□ -0.37
PTPN7-204	ENST00000462815	CFAP54	Q96N23	3096 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	IGLV3-22	A0A075B6J6	115 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	LOC730098	B7Z3J9	87 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	CSPG5	O95196	566 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	SARS	P49591	514 aa	Known RBP	12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	STAT5B	P51692	787 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	PAK2	Q13177	524 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	CBX2	Q14781	532 aa	Predicted RBP	12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	TMEM266	Q2M3C6	531 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	PAN2	Q504Q3	1202 aa	Known RBP	12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	CCDC60	Q8IWA6	550 aa	Predicted RBP	12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	KIAA0319L	Q8IZA0	1049 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	NME8	Q8N427	588 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	ATP8B4	Q8TF62	1192 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	POF1B	Q8WVV4	589 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	KCNH6	Q9H252	994 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	IGFLR1	Q9H665	355 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	AZI2	Q9H6S1	392 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	TMEM260	Q9NX78	707 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	HCST	Q9UBK5	93 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	TRPC6	Q9Y210	931 aa		12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815	NOC2L	Q9Y3T9	749 aa	Known RBP	12.75	□□□□□ -0.37
PTPN7-204	ENST00000462815		C9IYK1	514 aa		12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms