RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 CARMIL3Q8ND23 1372 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 GSG1L2A8MUP6 293 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 CHURC1-FNTBB4DL54 471 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 AKAP10O43572 662 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 HYAL3O43820 417 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 COBLO75128 1261 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 EOMESO95936 686 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 FOSP01100 380 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 FGAP02671 866 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 FAM153BP0C7A2 387 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 HMGB2P26583 209 aaKnown RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 NFIXQ14938 502 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 CYP27C1Q4G0S4 372 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 TMEM201Q5SNT2 666 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 AXDND1Q5T1B0 1012 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 CENPQQ7L2Z9 268 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 PPP1R42Q7Z4L9 355 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 NECAB2Q7Z6G3 386 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 SKAP1Q86WV1 359 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 FAM178BQ8IXR5 827 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 MIPEPQ99797 713 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 SPATA9Q9BWV2 254 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 PLA2G12BQ9BX93 195 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 PDGFDQ9GZP0 370 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 CDH19Q9H159 772 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 RWDD1Q9H446 243 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 STK32BQ9NY57 414 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 ZC3H7BQ9UGR2 993 aaKnown RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 TRMT112Q9UI30 125 aaKnown RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 CHD4Q14839 1912 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 ZNF646O15015 1829 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-205ENST00000462254 DOCK2Q92608 1830 aa5.6□□□□□ -1.51
CSMD3-205ENST00000462254 SH3TC1Q8TE82 1336 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 SCO2A0A1W2PP80 73 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 B2RBV5 119 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 POLRMTO00411 1230 aaKnown RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 SRGAP3O43295 1099 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 ADCY3O60266 1144 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 ADAMTS4O75173 837 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 TM4SF1P30408 202 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 RFX5P48382 616 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 CTSWP56202 376 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 DDR1Q08345 913 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 PIN1Q13526 163 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 PPP2R5EQ16537 467 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 CPSF6Q16630 551 aaKnown RBP eCLIP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 MSMPQ1L6U9 139 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 SLC6A19Q695T7 634 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 NXNQ6DKJ4 435 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 MRM1Q6IN84 353 aaKnown RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 LETMD1Q6P1Q0 360 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 LMBR1LQ6UX01 489 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 C6orf15Q6UXA7 325 aaPredicted RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 GK5Q6ZS86 529 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 EEPD1Q7L9B9 569 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 TCEAL8Q8IYN2 117 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 UBR7Q8N806 425 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 MFSD2AQ8NA29 543 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 FLAD1Q8NFF5 587 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 KIF2CQ99661 725 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 UTP14AQ9BVJ6 771 aaKnown RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 DCTPP1Q9H773 170 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 KLHL3Q9UH77 587 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 PA2G4Q9UQ80 394 aaKnown RBP5.59□□□□□ -1.51
CSMD3-205ENST00000462254 EXOC6BQ9Y2D4 811 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 ARFGEF1Q9Y6D6 1849 aa5.59□□□□□ -1.51
CSMD3-205ENST00000462254 PSME4Q14997 1843 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 DNAJC25-GNG10A0A024R161 153 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GOLGA6CA6NDK9 693 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GOLGA6BA6NDN3 693 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 HMMRO75330 724 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 KATNA1O75449 491 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 EYA4O95677 639 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 SERPINB2P05120 415 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 CSF1RP07333 972 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GOLGA6DP0CG33 693 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GRIK1P39086 918 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 RAPGEF1Q13905 1077 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 LRP8Q14114 963 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 FNDC3BQ53EP0 1204 aaKnown RBP5.58□□□□□ -1.52
CSMD3-205ENST00000462254 ARTNQ5T4W7 220 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 PRR5LQ6MZQ0 368 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 PCGF5Q86SE9 256 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 CDH24Q86UP0 819 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 NBPF5PQ86XG9 351 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-205ENST00000462254 LRRC47Q8N1G4 583 aaKnown RBP5.58□□□□□ -1.52
CSMD3-205ENST00000462254 PLD6Q8N2A8 252 aaKnown RBP5.58□□□□□ -1.52
CSMD3-205ENST00000462254 Q8N3U1 123 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 FAM13CQ8NE31 585 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 TTLL11Q8NHH1 800 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 KLHDC4Q8TBB5 520 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 PPP1R13LQ8WUF5 828 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GCC1Q96CN9 775 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 NYXQ9GZU5 481 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 ANTXR1Q9H6X2 564 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 EHMT1Q9H9B1 1298 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 GOLGA6AQ9NYA3 693 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 SWAP70Q9UH65 585 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 HDAC5Q9UQL6 1122 aa5.58□□□□□ -1.52
CSMD3-205ENST00000462254 FER1L6Q2WGJ9 1857 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms