RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 CAAP1Q9H8G2 361 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 JADE2Q9NQC1 790 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 INTS7Q9NVH2 962 aaKnown RBP4.95□□□□□ -1.62
VPS41-207ENST00000439468 SAMD15Q9P1V8 674 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 ARHGAP20Q9P2F6 1191 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 ZFP69BQ9UJL9 534 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CBLCQ9ULV8 474 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 WASF3Q9UPY6 502 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 ZDHHC9Q9Y397 364 aa4.95□□□□□ -1.62
VPS41-207ENST00000439468 CCDC66A2RUB6 948 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 PRAMEF25A6NGN4 478 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 C9orf118A6NHY6 69 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 ZNF891A8MT65 544 aaPredicted RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 M0R2C6 588 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 TRAF5O00463 557 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 GSTA4O15217 222 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 ENO2P09104 434 aaPredicted RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 PDE6AP16499 860 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 CDKN1CP49918 316 aaPredicted RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 IGBP1P78318 339 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 NFKB2Q00653 900 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 STRN3Q13033 797 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 ZNF827Q17R98 1081 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 TAF7LQ5H9L4 462 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 HABP4Q5JVS0 413 aaKnown RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 PLEKHH3Q7Z736 793 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 PROSER1Q86XN7 944 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 DDX42Q86XP3 938 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS41-207ENST00000439468 CISD2Q8N5K1 135 aaKnown RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 STPG3Q8N7X2 389 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 DTX3Q8N9I9 347 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 WNK4Q96J92 1243 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 YTHDC1Q96MU7 727 aaKnown RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 BARX1Q9HBU1 254 aaPredicted RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 ARHGAP28Q9P2N2 729 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 SRPK3Q9UPE1 567 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 NOP58Q9Y2X3 529 aaKnown RBP4.94□□□□□ -1.62
VPS41-207ENST00000439468 ATP23Q9Y6H3 246 aa4.94□□□□□ -1.62
VPS41-207ENST00000439468 TCRBV5S4A2TA0A5A2 114 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 PTPN1P18031 435 aaKnown RBP4.93□□□□□ -1.62
VPS41-207ENST00000439468 IBSPP21815 317 aaPredicted RBP4.93□□□□□ -1.62
VPS41-207ENST00000439468 ID4P47928 161 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 PFKPQ01813 784 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 SMAD2Q15796 467 aaKnown RBP4.93□□□□□ -1.62
VPS41-207ENST00000439468 SPATS1Q496A3 300 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 CT47A1Q5JQC4 288 aaPredicted RBP4.93□□□□□ -1.62
VPS41-207ENST00000439468 OVCH1Q7RTY7 1134 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 OSTM1Q86WC4 334 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 SH3RF2Q8TEC5 729 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 LOXL4Q96JB6 756 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 TACO1Q9BSH4 297 aaKnown RBP4.93□□□□□ -1.62
VPS41-207ENST00000439468 SLC39A2Q9NP94 309 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 HSPBP1Q9NZL4 362 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 MAPRE3Q9UPY8 281 aa4.93□□□□□ -1.62
VPS41-207ENST00000439468 ZNF839A8K0R7 811 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 ACOT7O00154 380 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 PLATP00750 562 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 POU3F2P20265 443 aaPredicted RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 EPHA5P54756 1037 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 JAM2P57087 298 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 FAM50AQ14320 339 aaKnown RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 TBC1D10BQ4KMP7 808 aaPredicted RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 FIGNQ5HY92 759 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 GLB1LQ6UWU2 654 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 ARHGEF18Q6ZSZ5 1173 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 UBE2R2Q712K3 238 aaPredicted RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 DDX46Q7L014 1031 aaKnown RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 C16orf59Q7L2K0 433 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 KBTBD2Q8IY47 623 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 ANKRD13AQ8IZ07 590 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 AFAP1L2Q8N4X5 818 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 PRPF38AQ8NAV1 312 aaKnown RBP4.92□□□□□ -1.62
VPS41-207ENST00000439468 NUDT10Q8NFP7 164 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 NUDT11Q96G61 164 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 ATP8A1Q9Y2Q0 1164 aa4.92□□□□□ -1.62
VPS41-207ENST00000439468 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.91□□□□□ -1.62
VPS41-207ENST00000439468 H0Y858 1186 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 MAN2B1O00754 1011 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 LAMTOR5O43504 91 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 B4GALT3O60512 393 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 B4GALT4O60513 344 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 EYA4O95677 639 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 AMY2AP04746 511 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 ITGB3P05106 788 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 ADRB1P08588 477 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 AMY2BP19961 511 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 GJA4P35212 333 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 SOX5P35711 763 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 ANAPC15P60006 121 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 NFATC3Q12968 1075 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 SURF1Q15526 300 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 TMEM177Q53S58 311 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 FSTL4Q6MZW2 842 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 GPR155Q7Z3F1 870 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 RALYLQ86SE5 291 aaKnown RBP4.91□□□□□ -1.62
VPS41-207ENST00000439468 DDX53Q86TM3 631 aaKnown RBP4.91□□□□□ -1.62
VPS41-207ENST00000439468 PPM1KQ8N3J5 372 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 KLHL36Q8N4N3 616 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 CHST13Q8NET6 341 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 ZCRB1Q8TBF4 217 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms