RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 SEMA3FQ13275 785 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 TMTC3Q6ZXV5 915 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 MIGA1Q8NAN2 632 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 SGSM3Q96HU1 749 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 KRT12Q99456 494 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 PLIN2Q99541 437 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 TPX2Q9ULW0 747 aaKnown RBP9.39□□□□□ -0.91
HPS4-206ENST00000439453 CENPFP49454 3210 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 FLT1P17948 1338 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 EPHB6O15197 1021 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 NKRFO15226 690 aaKnown RBP eCLIP9.39□□□□□ -0.91
HPS4-206ENST00000439453 EZRP15311 586 aaKnown RBP9.39□□□□□ -0.91
HPS4-206ENST00000439453 CYP7A1P22680 504 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 GSTO1P78417 241 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 SATB1Q01826 763 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 TRADDQ15628 312 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 SPRED3Q2MJR0 410 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 ANKRD20A8PQ5CZ79 823 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 GPIHBP1Q8IV16 184 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 KLRG1Q96E93 195 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 SCLT1Q96NL6 688 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 ZNF408Q9H9D4 720 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 KBTBD4Q9NVX7 518 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 CNTNAP5Q8WYK1 1306 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 PP2D1A8MPX8 630 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 LRIG3Q6UXM1 1119 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 ZIC5Q96T25 663 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 DNAJC18Q9H819 358 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 PLCB1Q9NQ66 1216 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 FAM207AQ9NSI2 230 aaPredicted RBP9.39□□□□□ -0.91
HPS4-206ENST00000439453 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.39□□□□□ -0.91
HPS4-206ENST00000439453 SIK3Q9Y2K2 1263 aa9.39□□□□□ -0.91
HPS4-206ENST00000439453 SMIM22K7EJ46 135 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 ENTPD3O75355 529 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CALM1P0DP23 149 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CALM2P0DP24 149 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CALM3P0DP25 149 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 VEGFBP49765 207 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 TCP10Q12799 353 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 TROAPQ12815 778 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CRYMQ14894 314 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CDC37Q16543 378 aaPredicted RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 QPCTQ16769 361 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 TMED8Q6PL24 325 aaPredicted RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 TEX11Q8IYF3 940 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 RNF10Q8N5U6 811 aaKnown RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 PHF20L1A8MW92 1017 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 GCOM1H8Y6P7 765 aaPredicted RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 TRAPPC3O43617 180 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 MYZAPP0CAP1 466 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SCG2P13521 617 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 PPARDQ03181 441 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 RRP1BQ14684 758 aaKnown RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 DTHD1Q6ZMT9 781 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 RRAGAQ7L523 313 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SRBD1Q8N5C6 995 aaKnown RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 FAXDC2Q96IV6 333 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 GRID2IPA4D2P6 1211 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 LRRC53A6NM62 1247 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 GJA5P36382 358 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 UBA7P41226 1012 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SLC1A4P43007 532 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SCTRP47872 440 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 DNA2P51530 1060 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 CLNS1AP54105 237 aaKnown RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 FKBP1BP68106 108 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 GFPT1Q06210 699 aaPredicted RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 PDE4DQ08499 809 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 TNFAIP1Q13829 316 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 RASAL3Q86YV0 1011 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SLF2Q8IX21 1173 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.38□□□□□ -0.91
HPS4-206ENST00000439453 CCDC47Q96A33 483 aaKnown RBP9.38□□□□□ -0.91
HPS4-206ENST00000439453 SEC16BQ96JE7 1060 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 MMRN2Q9H8L6 949 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 SLC12A6Q9UHW9 1150 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 ZNF112Q9UJU3 913 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 ANAPC4Q9UJX5 808 aa9.38□□□□□ -0.91
HPS4-206ENST00000439453 PAX7P23759 505 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 E2F5Q15329 346 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 VWA3BQ502W6 1294 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 CCDC178Q5BJE1 867 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 SDR42E1Q8WUS8 393 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 CLMNQ96JQ2 1002 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 RAD51CO43502 376 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 DDAH1O94760 285 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 LDHCP07864 332 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 SLC8A1P32418 973 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 IFFO1Q0D2I5 559 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 STK4Q13043 487 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 PPP2R5AQ15172 486 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 ASTE1Q2TB18 679 aaPredicted RBP9.37□□□□□ -0.91
HPS4-206ENST00000439453 LACTB2Q53H82 288 aaPredicted RBP9.37□□□□□ -0.91
HPS4-206ENST00000439453 CYP4F22Q6NT55 531 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 TLDC1Q6P9B6 456 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 CACNA2D3Q8IZS8 1091 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 LRRC15Q8TF66 581 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 ATP6V0A4Q9HBG4 840 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 SLC10A3P09131 477 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 TMOD1P28289 359 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms