RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 SPP2Q13103 211 aa17.09■□□□□ 0.33
SCARF1-203ENST00000434376 CCDC127Q96BQ5 260 aa17.09■□□□□ 0.33
SCARF1-203ENST00000434376 MTMR8Q96EF0 704 aa17.09■□□□□ 0.33
SCARF1-203ENST00000434376 SERPINA10Q9UK55 444 aa17.09■□□□□ 0.33
SCARF1-203ENST00000434376 DDX60LQ5H9U9 1706 aaKnown RBP17.08■□□□□ 0.33
SCARF1-203ENST00000434376 A0A087X0T9 212 aa17.08■□□□□ 0.33
SCARF1-203ENST00000434376 PVALEFA0A1B0GWK0 134 aa17.08■□□□□ 0.33
SCARF1-203ENST00000434376 LRRIQ3A6PVS8 624 aaPredicted RBP17.08■□□□□ 0.33
SCARF1-203ENST00000434376 RNF40O75150 1001 aa17.08■□□□□ 0.33
SCARF1-203ENST00000434376 FAM228BP0C875 321 aa17.08■□□□□ 0.33
SCARF1-203ENST00000434376 GIT2Q14161 759 aa17.08■□□□□ 0.33
SCARF1-203ENST00000434376 RSBN1LQ6PCB5 846 aaPredicted RBP17.08■□□□□ 0.33
SCARF1-203ENST00000434376 RGL2O15211 777 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 CLK2P49760 499 aaKnown RBP17.08■□□□□ 0.32
SCARF1-203ENST00000434376 ZNF668Q96K58 619 aaPredicted RBP17.08■□□□□ 0.32
SCARF1-203ENST00000434376 WRAP73Q9P2S5 460 aaPredicted RBP17.08■□□□□ 0.32
SCARF1-203ENST00000434376 KIAA1551Q9HCM1 1747 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 XRCC5P13010 732 aaKnown RBP17.08■□□□□ 0.32
SCARF1-203ENST00000434376 NPEPPSP55786 919 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 SF3A3Q12874 501 aaKnown RBP eCLIP17.08■□□□□ 0.32
SCARF1-203ENST00000434376 TMEM119Q4V9L6 283 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 FAM178BQ8IXR5 827 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 SUGT1Q9Y2Z0 365 aa17.08■□□□□ 0.32
SCARF1-203ENST00000434376 A0A1W2PQC6 194 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 EEPD1Q7L9B9 569 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 TRIM31Q9BZY9 425 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 ACP6Q9NPH0 428 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 SIK3Q9Y2K2 1263 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 CCDC169A6NNP5 214 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 PLSCR1O15162 318 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 MYBL2P10244 700 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 LIG3P49916 1009 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 SLC9C1Q4G0N8 1177 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 CT47A1Q5JQC4 288 aaPredicted RBP17.07■□□□□ 0.32
SCARF1-203ENST00000434376 PLA2G4FQ68DD2 849 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 ZNF772Q68DY9 489 aaPredicted RBP17.07■□□□□ 0.32
SCARF1-203ENST00000434376 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.07■□□□□ 0.32
SCARF1-203ENST00000434376 ZSWIM2Q8NEG5 633 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 NUP58Q9BVL2 599 aa17.07■□□□□ 0.32
SCARF1-203ENST00000434376 ARHGEF35A5YM69 484 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 WNT10BO00744 389 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 CALCAP01258 141 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 MYL1P05976 194 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 GCFC2P16383 781 aaKnown RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 KLRC1P26715 233 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 SSTR3P32745 418 aaPredicted RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 ZNF746Q6NUN9 644 aaPredicted RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 PACS2Q86VP3 889 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 SLFN12Q8IYM2 578 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 WNK4Q96J92 1243 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 IDI2Q9BXS1 227 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 UBXN6Q9BZV1 441 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 GOPCQ9HD26 462 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 L1RE1Q9UN81 338 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 EXOC3O60645 756 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 GUCY2FP51841 1108 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 VAV2P52735 878 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 SLC20A2Q08357 652 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 MTMR2Q13614 643 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 EXOC3L4Q17RC7 722 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 WDR78Q5VTH9 848 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 U2AF1L4Q8WU68 220 aaKnown RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 GCNT4Q9P109 453 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 NAV1Q8NEY1 1877 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 KDM3AQ9Y4C1 1321 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 IPO5O00410 1097 aaKnown RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 PALMO75781 387 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 HARSP12081 509 aaKnown RBP17.06■□□□□ 0.32
SCARF1-203ENST00000434376 LRRC63Q05C16 580 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 AFAP1L1Q8TED9 768 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 LXNQ9BS40 222 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 GBP3Q9H0R5 595 aa17.06■□□□□ 0.32
SCARF1-203ENST00000434376 POTEB2H3BUK9 544 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 MAP2K7O14733 419 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 TLR2O60603 784 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 NR3C1P04150 777 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 ASIC2Q16515 512 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 ETNPPLQ8TBG4 499 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 LENG9Q96B70 501 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 LRRC1Q9BTT6 524 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 MAGEF1Q9HAY2 307 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 KCNMB3Q9NPA1 279 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 DMGDHQ9UI17 866 aaKnown RBP17.05■□□□□ 0.32
SCARF1-203ENST00000434376 SLC12A3P55017 1021 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 TTYH3Q9C0H2 523 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 JRKLQ9Y4A0 524 aa17.05■□□□□ 0.32
SCARF1-203ENST00000434376 K7ENM7 598 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 USP11P51784 963 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 KNOP1Q1ED39 458 aaKnown RBP17.04■□□□□ 0.32
SCARF1-203ENST00000434376 RINT1Q6NUQ1 792 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 LRRC31Q6UY01 552 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 SND1Q7KZF4 910 aaKnown RBP eCLIP17.04■□□□□ 0.32
SCARF1-203ENST00000434376 AP1M1Q9BXS5 423 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 UNC45AQ9H3U1 944 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 PLAGL2Q9UPG8 496 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 NBPF12Q5TAG4 269 aaPredicted RBP17.04■□□□□ 0.32
SCARF1-203ENST00000434376 MIER3Q7Z3K6 550 aa17.04■□□□□ 0.32
SCARF1-203ENST00000434376 ERGIC2Q96RQ1 377 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms