RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ARFGEF1Q9Y6D6 1849 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 F8W031 263 aaPredicted RBP12.37□□□□□ -0.43
USP4-205ENST00000431357 TOM1O60784 492 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 KIF4AO95239 1232 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 MYBP10242 640 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 XRCC5P13010 732 aaKnown RBP12.37□□□□□ -0.43
USP4-205ENST00000431357 CACNB1Q02641 598 aaPredicted RBP12.37□□□□□ -0.43
USP4-205ENST00000431357 PTK2Q05397 1052 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 SPIRE1Q08AE8 756 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 SLFN13Q68D06 897 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 DPY19L2P1Q6NXN4 242 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 CERS5Q8N5B7 392 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 IFT81Q8WYA0 676 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 ARL8AQ96BM9 186 aa12.37□□□□□ -0.43
USP4-205ENST00000431357 TYW1Q9NV66 732 aaKnown RBP12.37□□□□□ -0.43
USP4-205ENST00000431357 GRIN2DO15399 1336 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 A0A0A6YYK5 440 aaPredicted RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 GTPBP10A4D1E9 387 aaKnown RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 POTEFA5A3E0 1075 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 TULP1O00294 542 aaPredicted RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 MEIS2O14770 477 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 RIMBP2O15034 1052 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 KIF1CO43896 1103 aaKnown RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 GFPT2O94808 682 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 CCDC172P0C7W6 258 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 POTEIP0CG38 1075 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 GUCY2CP25092 1073 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 PON1P27169 355 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 STAT3P40763 770 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 CUL1Q13616 776 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 POTEGQ6S5H5 508 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 POTEEQ6S8J3 1075 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 KDM7AQ6ZMT4 941 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 ZNF571Q7Z3V5 609 aaPredicted RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 SPATS2Q86XZ4 545 aaKnown RBP12.36□□□□□ -0.43
USP4-205ENST00000431357 BCAS4Q8TDM0 211 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 SCFD2Q8WU76 684 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 CASKIN2Q8WXE0 1202 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 AMNQ9BXJ7 453 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 PACSIN1Q9BY11 444 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 ISCUQ9H1K1 167 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 MYH4Q9Y623 1939 aa12.36□□□□□ -0.43
USP4-205ENST00000431357 LOC102724159A0A0B4J2E5 919 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 KCNK3O14649 394 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 CPP00450 1065 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 GAP43P17677 238 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SLC9A1P19634 815 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 CIITAP33076 1130 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 HSPA9P38646 679 aaKnown RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 NPEPPSP55786 919 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SATB1Q01826 763 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 PWP2Q15269 919 aaKnown RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 EPHA7Q15375 998 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 ALKBH5Q6P6C2 394 aaKnown RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 LRIG3Q6UXM1 1119 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SFR1Q86XK3 245 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SYCE1Q8N0S2 351 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 REEP2Q9BRK0 252 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 POLR3CQ9BUI4 534 aaPredicted RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 TAF1DQ9H5J8 278 aaPredicted RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 NAGPAQ9UK23 515 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 KIF13BQ9NQT8 1826 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SPDYE3A6NKU9 549 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SRRM3A6NNA2 597 aaPredicted RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 HMGB1P1B2RPK0 211 aaPredicted RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 CCDC188H7C350 402 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 RAD51CO43502 376 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 ZEB2O60315 1214 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SPATA31C1P0DKV0 1188 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 EEF2P13639 858 aaKnown RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 FERP16591 822 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 SREBF1P36956 1147 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 CCT5P48643 541 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 TTC31Q49AM3 519 aaPredicted RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 PRR16Q569H4 304 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 APOBEC3HQ6NTF7 200 aaKnown RBP12.35□□□□□ -0.43
USP4-205ENST00000431357 B4GALNT4Q76KP1 1039 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 MRIQ9BWK5 157 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 PLEKHA4Q9H4M7 779 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 LRRC4BQ9NT99 713 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 USP21Q9UK80 565 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 NENFQ9UMX5 172 aa12.35□□□□□ -0.43
USP4-205ENST00000431357 TBCAO75347 108 aaKnown RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 EYA4O95677 639 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 NR3C1P04150 777 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 H2AFZP0C0S5 128 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FAM153BP0C7A2 387 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 ACTN1P12814 892 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 DNA2P51530 1060 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 CASP5P51878 434 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 PABPC4Q13310 644 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP4-205ENST00000431357 ENOX2Q16206 610 aaKnown RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 NFIL3Q16649 462 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FAM153CQ494X1 144 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 CERKLQ49MI3 558 aaPredicted RBP12.34□□□□□ -0.43
USP4-205ENST00000431357 H2AFVQ71UI9 128 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FBXO11Q86XK2 927 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 FMNL3Q8IVF7 1028 aa12.34□□□□□ -0.43
USP4-205ENST00000431357 LRRC57Q8N9N7 239 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms