RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 ATP8A1Q9Y2Q0 1164 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 MYH14Q7Z406 1995 aaKnown RBP23.2■■□□□ 1.3
USP48-205ENST00000421625 GNA14O95837 355 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 IFFO1Q0D2I5 559 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 ADAM9Q13443 819 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 MAPKAPK5Q8IW41 473 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 SCFD1Q8WVM8 642 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 MIEF2Q96C03 454 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 SPAG5Q96R06 1193 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 PCDHA2Q9Y5H9 948 aa23.2■■□□□ 1.3
USP48-205ENST00000421625 CCDC188H7C350 402 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 CAND2O75155 1236 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 DPY19L2P1Q6NXN4 242 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 ARMC9Q7Z3E5 817 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 RBM46Q8TBY0 533 aaKnown RBP23.19■■□□□ 1.3
USP48-205ENST00000421625 CHMP6Q96FZ7 201 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 XPO6Q96QU8 1125 aaKnown RBP23.19■■□□□ 1.3
USP48-205ENST00000421625 KCTD10Q9H3F6 313 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 MAST2Q6P0Q8 1798 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 E9PMD0 336 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 ECM2O94769 699 aaPredicted RBP23.19■■□□□ 1.3
USP48-205ENST00000421625 NR2E1Q9Y466 385 aa23.19■■□□□ 1.3
USP48-205ENST00000421625 EZRP15311 586 aaKnown RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 IFI16Q16666 785 aaKnown RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 C10orf76Q5T2E6 689 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 BICDL1Q6ZP65 573 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 MAGEC3Q8TD91 643 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 TLCD1Q96CP7 247 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 KDM4CQ9H3R0 1056 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 USP17L5A8MUK1 530 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 MGRN1O60291 552 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 CTNND1O60716 968 aaKnown RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 DNAJC8O75937 253 aaPredicted RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 UCHL3P15374 230 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 TNNI2P48788 182 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 GRIK5Q16478 980 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 ERMARDQ5T6L9 678 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 RASGEF1CQ8N431 466 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 BANK1Q8NDB2 785 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 EYA3Q99504 573 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 SLITRK6Q9H5Y7 841 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 STXBP5LQ9Y2K9 1186 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 FRMPD2Q68DX3 1309 aaPredicted RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 SHBGP04278 402 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 ELF3P78545 371 aaPredicted RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 HERC4Q5GLZ8 1057 aaPredicted RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 CCDC26Q8TAB7 109 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 FAM129AQ9BZQ8 928 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 AJAP1Q9UKB5 411 aaPredicted RBP23.18■■□□□ 1.3
USP48-205ENST00000421625 HDAC9Q9UKV0 1011 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 ATAD5Q96QE3 1844 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 SNED1Q8TER0 1413 aa23.18■■□□□ 1.3
USP48-205ENST00000421625 PPIP5K2O43314 1243 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 TRIM37O94972 964 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 MSL1Q68DK7 614 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 DAAM2Q86T65 1068 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 ATP8B4Q8TF62 1192 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 SEC14L1Q92503 715 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 UTP11Q9Y3A2 253 aaKnown RBP23.17■■□□□ 1.3
USP48-205ENST00000421625 ESYT2A0FGR8 921 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 FRMD3A2A2Y4 597 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 ADCY7P51828 1080 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 MRPL12P52815 198 aaKnown RBP23.17■■□□□ 1.3
USP48-205ENST00000421625 HAS1Q92839 578 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 EMILIN3Q9NT22 766 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 USP21Q9UK80 565 aa23.17■■□□□ 1.3
USP48-205ENST00000421625 FAM170AA1A519 330 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 GHRP10912 638 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 UBE2SQ16763 222 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 HIBCHQ6NVY1 386 aaPredicted RBP23.16■■□□□ 1.3
USP48-205ENST00000421625 NT5DC3Q86UY8 548 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 LINC00116Q8NCU8 138 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 TBC1D31Q96DN5 1066 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.16■■□□□ 1.3
USP48-205ENST00000421625 CCT8L1PA6NM43 557 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 ATP6V1G2O95670 118 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 CHN1P15882 459 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 GCFC2P16383 781 aaKnown RBP23.16■■□□□ 1.3
USP48-205ENST00000421625 COPB2P35606 906 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 PPP1R7Q15435 360 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 SLFN11Q7Z7L1 901 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 KIRREL3Q8IZU9 778 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 CCDC197Q8NCU1 140 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 CEP95Q96GE4 821 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 ZHX3Q9H4I2 956 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 CNOT10Q9H9A5 744 aaKnown RBP23.16■■□□□ 1.3
USP48-205ENST00000421625 FAM114A2Q9NRY5 505 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 SWAP70Q9UH65 585 aa23.16■■□□□ 1.3
USP48-205ENST00000421625 NR2F2P24468 414 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 HOXA7P31268 230 aaPredicted RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 CDK8P49336 464 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 RPS8P62241 208 aaKnown RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 POU5F1Q01860 360 aaKnown RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 SEPT2Q15019 361 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 ACCSLQ4AC99 568 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 ADAT2Q7Z6V5 191 aaKnown RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 P3H4Q92791 437 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 ZNF317Q96PQ6 595 aaPredicted RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 FMO2Q99518 471 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 BMP2KQ9NSY1 1161 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms