RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 PLIN2Q99541 437 aa9.47□□□□□ -0.89
TRIM48-201ENST00000417545 TSEN34Q9BSV6 310 aaKnown RBP9.47□□□□□ -0.89
TRIM48-201ENST00000417545 POLR3CQ9BUI4 534 aaPredicted RBP9.47□□□□□ -0.89
TRIM48-201ENST00000417545 TUT1Q9H6E5 874 aaKnown RBP9.47□□□□□ -0.89
TRIM48-201ENST00000417545 STARD7Q9NQZ5 370 aa9.47□□□□□ -0.89
TRIM48-201ENST00000417545 DDX19AQ9NUU7 478 aaKnown RBP9.47□□□□□ -0.89
TRIM48-201ENST00000417545 RGL1Q9NZL6 768 aa9.47□□□□□ -0.89
TRIM48-201ENST00000417545 KIAA1024Q9UPX6 916 aa9.47□□□□□ -0.89
TRIM48-201ENST00000417545 DNM3Q9UQ16 869 aa9.47□□□□□ -0.89
TRIM48-201ENST00000417545 KAT6AQ92794 2004 aa9.46□□□□□ -0.89
TRIM48-201ENST00000417545 IGSF9BQ9UPX0 1349 aa9.46□□□□□ -0.89
TRIM48-201ENST00000417545 ARID2Q68CP9 1835 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1B0GVL5 298 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 POTEFA5A3E0 1075 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 ARHGEF35A5YM69 484 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 LGR5O75473 907 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 ATG7O95352 703 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 OATP04181 439 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 KRT18P05783 430 aaKnown RBP9.46□□□□□ -0.9
TRIM48-201ENST00000417545 MUTP22033 750 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 GJA8P48165 433 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 ACLYP53396 1101 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 UBE2HP62256 183 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 IGBP1P78318 339 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 PURAQ00577 322 aaKnown RBP9.46□□□□□ -0.9
TRIM48-201ENST00000417545 DHX8Q14562 1220 aaKnown RBP9.46□□□□□ -0.9
TRIM48-201ENST00000417545 KARSQ15046 597 aaKnown RBP9.46□□□□□ -0.9
TRIM48-201ENST00000417545 IL17AQ16552 155 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 KIAA0753Q2KHM9 967 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 MTERF2Q49AM1 385 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 XKR9Q5GH70 373 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 XKR3Q5GH77 459 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 PLPPR4Q7Z2D5 763 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 ANKLE1Q8NAG6 615 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 AFAP1L1Q8TED9 768 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 BBXQ8WY36 941 aaPredicted RBP9.46□□□□□ -0.9
TRIM48-201ENST00000417545 DHX58Q96C10 678 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 EPSTI1Q96J88 318 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 NACC1Q96RE7 527 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 PANK2Q9BZ23 570 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 CCSER1Q9C0I3 900 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 OGDHLQ9ULD0 1010 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 NOD1Q9Y239 953 aa9.46□□□□□ -0.9
TRIM48-201ENST00000417545 A0A0U1RQG5 324 aaPredicted RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1W2PQ27 194 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1W2PQ45 241 aaPredicted RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1W2PQ64 194 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1W2PQD8 194 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 A0A1W2PQY0 241 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 CCDC85CA6NKD9 419 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 HBP1O60381 514 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 KINO60870 393 aaKnown RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 MED24O75448 989 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 F2P00734 622 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 GNAT1P11488 350 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 PFKFB1P16118 471 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 PLCG1P19174 1290 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 CMA1P23946 247 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 YWHABP31946 246 aaKnown RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 SYKP43405 635 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 IRX5P78411 483 aaPredicted RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 PPFIA1Q13136 1202 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 UGCGQ16739 394 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 COL13A1Q5TAT6 717 aaPredicted RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 RESP18Q5W5W9 173 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 SHC4Q6S5L8 630 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 B3GNT9Q6UX72 402 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 CATSPER3Q86XQ3 398 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 C4orf19Q8IY42 314 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 IQUBQ8NA54 791 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 TMEM87AQ8NBN3 555 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 KLHDC9Q8NEP7 349 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 CEP170P1Q96L14 293 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 SENP6Q9GZR1 1112 aaPredicted RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 STK17AQ9UEE5 414 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 HOOK1Q9UJC3 728 aaKnown RBP9.45□□□□□ -0.9
TRIM48-201ENST00000417545 KCNH3Q9ULD8 1083 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 TELO2Q9Y4R8 837 aa9.45□□□□□ -0.9
TRIM48-201ENST00000417545 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 C17orf102A2RUQ5 167 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 TLR3O15455 904 aaKnown RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 POLR2DO15514 142 aaKnown RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 SLITRK3O94933 977 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 POLGP54098 1239 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 PSMC6P62333 389 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 AMPD3Q01432 767 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 TBC1D8BQ0IIM8 1120 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 ITGA7Q13683 1181 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 PLCB4Q15147 1175 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 ZNF484Q5JVG2 852 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 AXDND1Q5T1B0 1012 aaPredicted RBP9.44□□□□□ -0.9
TRIM48-201ENST00000417545 PLA2G4FQ68DD2 849 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 CLEC17AQ6ZS10 378 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 SV2BQ7L1I2 683 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 EXOC8Q8IYI6 725 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 KCTD17Q8N5Z5 321 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 RETREG2Q8NC44 543 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 PIGOQ8TEQ8 1089 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 ATP8B4Q8TF62 1192 aa9.44□□□□□ -0.9
TRIM48-201ENST00000417545 LARP4BQ92615 738 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms